BDgene

GO Report

Basic Info
ID GO:0005654
Name nucleoplasm
Type cellular component
No. of Genes in BDgene  163
Source Pathway by Database Search

PBA Result

GO related genes in BDgene (count: 163)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend) Evidence[PMID]
CUL1 cullin 1 7q36.1 1(1/0/0) TAS
IRF2BP2 interferon regulatory factor 2 binding protein 2 1q42.3 1(0/1/0) IDA
FKBP5 FK506 binding protein 5 6p21.31 5(1/4/0) IDA
POLE2 polymerase (DNA directed), epsilon 2, accessory subunit 14q21-q22 1(1/0/0) IDA; TAS
TNR tenascin R 1q24 2(0/2/0) IDA
CLOCK clock circadian regulator 4q12 12(5/7/0) IDA
NAV2 neuron navigator 2 11p15.1 1(1/0/0) IDA
NIPBL Nipped-B homolog (Drosophila) 5p13.2 1(0/1/0) TAS
HNF4A hepatocyte nuclear factor 4, alpha 20q13.12 1(1/0/0) TAS
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) 10q25.3 1(1/0/0) IDA; TAS
CDC25B cell division cycle 25B 20p13 1(0/1/0) IDA; TAS
CDK13 cyclin-dependent kinase 13 7p14.1 1(1/0/0) IDA
IRF2 interferon regulatory factor 2 4q34.1-q35.1 1(1/0/0) IDA; TAS
PHF20 PHD finger protein 20 20q11.22-q11.23 1(0/1/0) IDA; TAS
MsrA methionine sulfoxide reductase A 8p23.1 1(1/0/0) IDA
NOTCH4 notch 4 6p21.3 2(0/2/0) TAS
OPA1 optic atrophy 1 (autosomal dominant) 3q29 1(0/1/0) IDA
GTF3C5 general transcription factor IIIC, polypeptide 5, 63kDa 9q34.13 1(0/1/0) TAS
ZRANB1 zinc finger, RAN-binding domain containing 1 10q26.12 1(1/0/0) IDA
SPRED1 sprouty-related, EVH1 domain containing 1 15q14 2(0/1/1) IDA
NR1D1 nuclear receptor subfamily 1, group D, member 1 17q11.2 6(2/4/0) TAS
BCL9 B-cell CLL/lymphoma 9 1q21 1(1/0/0) TAS
DCAF6 DDB1 and CUL4 associated factor 6 1q23.3 1(0/1/0) IDA
MAGI1 membrane associated guanylate kinase, WW and PDZ domain containing 1 3p14.1 1(1/0/0) IDA
KMT2E lysine (K)-specific methyltransferase 2E 7q22.1 1(0/0/1) IDA; TAS
MPPE1 metallophosphoesterase 1 18p11.21 2(2/0/0) IDA
NCAPD3 non-SMC condensin II complex, subunit D3 11q25 1(1/0/0) TAS
ERBB4 erb-b2 receptor tyrosine kinase 4 2q33.3-q34 2(1/1/0) TAS
FYTTD1 forty-two-three domain containing 1 3q29 1(0/1/0) IDA
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 5q31-q32 5(2/3/0) IDA; TAS
SLU7 SLU7 splicing factor homolog (S. cerevisiae) 5q33.3 1(0/0/1) IDA
NAA38 N(alpha)-acetyltransferase 38, NatC auxiliary subunit 17p13.1 1(1/0/0) IDA
RCOR1 REST corepressor 1 14q32.33 1(0/1/0) IDA; TAS
NUP214 nucleoporin 214kDa 9q34 1(0/1/0) TAS
NOTCH3 notch 3 19p13.2-p13.1 1(0/1/0) IDA; TAS
LPIN1 lipin 1 2p25.1 1(0/0/1) TAS
ZBED4 zinc finger, BED-type containing 4 22q13.33 1(1/0/0) IDA
ZNF74 zinc finger protein 74 22q11.2 1(0/1/0) IDA
HOXA3 homeobox A3 7p15.2 1(1/0/0) IDA
PPARGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta 5q33.1 1(1/0/0) TAS
GSK3B glycogen synthase kinase 3 beta 3q13.3 8(0/8/0) IDA
PRKACB protein kinase, cAMP-dependent, catalytic, beta 1p36.1 1(0/1/0) TAS
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 11p15.4 1(0/1/0) IDA; TAS
PRIM2 primase, DNA, polypeptide 2 (58kDa) 6p12-p11.1 1(0/0/1) TAS
NR2E1 nuclear receptor subfamily 2, group E, member 1 6q21 1(1/0/0) TAS
XBP1 X-box binding protein 1 22q12.1 3(2/1/0) TAS
SIRT1 sirtuin 1 10q21 1(0/1/0) IDA; TAS
TIPIN TIMELESS interacting protein 15q22.31 2(0/2/0) IDA
NUDCD1 NudC domain containing 1 8q23 1(0/1/0) IDA
INTS9 integrator complex subunit 9 8p21.1 1(1/0/0) IDA
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 14q32.33 1(1/0/0) IDA; TAS
DUSP6 dual specificity phosphatase 6 12q22-q23 5(3/2/0) TAS
ADARB1 adenosine deaminase, RNA-specific, B1 21q22.3 1(0/1/0) IDA; TAS
ADAM12 ADAM metallopeptidase domain 12 10q26 1(1/0/0) IDA
SIVA1 SIVA1, apoptosis-inducing factor 14q32.33 1(0/1/0) IDA[15034012]
SP4 Sp4 transcription factor 7p15 1(1/0/0) IDA
PHF8 PHD finger protein 8 Xp11.22 1(0/0/1) TAS
KIAA1009 centrosomal protein 162kDa 6q14.3 0 IDA
PPARD peroxisome proliferator-activated receptor delta 6p21.2 1(1/0/0) TAS
AEBP2 AE binding protein 2 12p12.3 1(1/0/0) TAS
NEK7 NIMA-related kinase 7 1q31.3 2(0/1/1) IDA
TRRAP transformation/transcription domain-associated protein 7q21.2-q22.1 1(0/1/0) IDA; TAS
CGRRF1 cell growth regulator with ring finger domain 1 14q22.2 1(0/1/0) IDA
HDAC9 histone deacetylase 9 7p21.1 1(1/0/0) TAS
HES1 hes family bHLH transcription factor 1 3q28-q29 1(0/1/0) IDA; TAS
FOXO3 forkhead box O3 6q21 1(1/0/0) IDA; TAS
DHX15 DEAH (Asp-Glu-Ala-His) box helicase 15 4p15.3 1(1/0/0) IDA
TLE4 transducin-like enhancer of split 4 9q21.32 2(1/1/0) TAS
RPTOR regulatory associated protein of MTOR, complex 1 17q25.3 2(1/1/0) IDA; TAS
PSMB9 proteasome (prosome, macropain) subunit, beta type, 9 6p21.3 1(1/0/0) TAS
KPNA5 karyopherin alpha 5 (importin alpha 6) 6q22.2 1(1/0/0) TAS
ZHX2 zinc fingers and homeoboxes 2 8q24.13 1(0/0/1) IDA
ANO2 anoctamin 2, calcium activated chloride channel 12p13.3 1(0/1/0) IDA
NR3C2 nuclear receptor subfamily 3, group C, member 2 4q31 1(1/0/0) TAS
TPX2 TPX2, microtubule-associated 20q11.2 1(1/0/0) IDA
GLI2 GLI family zinc finger 2 2q14 1(0/1/0) TAS
TBP TATA box binding protein 6q27 1(0/1/0) IDA; TAS
INA internexin neuronal intermediate filament protein, alpha 10q24 1(0/1/0) IDA
RAD51B RAD51 paralog B 14q23-q24.2 1(0/1/0) TAS
INTS6 integrator complex subunit 6 13q14.3 1(1/0/0) IDA
DGCR8 DGCR8 microprocessor complex subunit 22q11.2 2(1/0/1) IDA; TAS
CAMK2A calcium/calmodulin-dependent protein kinase II alpha 5q32 2(1/1/0) TAS
GNL3 guanine nucleotide binding protein-like 3 (nucleolar) 3p21.1 2(2/0/0) IEA
BRD1 bromodomain containing 1 22q13.33 2(2/0/0) IDA
PAX8 paired box 8 2q13 1(0/0/1) IDA; ISS
IRF8 interferon regulatory factor 8 16q24.1 1(1/0/0) IDA
CREBBP CREB binding protein 16p13.3 1(0/1/0) IDA; TAS
EGR1 early growth response 1 5q23-q31 1(0/1/0) IDA; TAS
MED12 mediator complex subunit 12 Xq13 1(0/1/0) IDA; TAS
ZBTB20 zinc finger and BTB domain containing 20 3q13.2 1(0/1/0) IDA
TCF7L1 transcription factor 7-like 1 (T-cell specific, HMG-box) 2p11.2 1(0/1/0) TAS
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 14q11.2 1(0/1/0) IDA; TAS
CBR3 carbonyl reductase 3 21q22.2 1(0/0/1) IDA
PPP2R5D protein phosphatase 2, regulatory subunit B', delta 6p21.1 1(1/0/0) TAS
PSPC1 paraspeckle component 1 13q11 1(0/1/0) IDA
ATXN1 ataxin 1 6p23 2(1/1/0) IDA
SURF6 surfeit 6 9q33-q34 1(0/1/0) IEA
BCL11A B-cell CLL/lymphoma 11A (zinc finger protein) 2p16.1 1(1/0/0) IDA
NR4A2 nuclear receptor subfamily 4, group A, member 2 2q22-q23 1(0/1/0) IDA; TAS
SPR sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) 2p14-p12 1(1/0/0) IDA
MYO18B myosin XVIIIB 22q12.1 2(0/2/0) IDA
OPTN optineurin 10p14 1(0/0/1) TAS
THRA thyroid hormone receptor, alpha 17q21.1 1(1/0/0) TAS
AKT1 v-akt murine thymoma viral oncogene homolog 1 14q32.33 3(3/0/0) IDA; TAS
NCOR2 nuclear receptor corepressor 2 12q24 1(0/1/0) IDA; TAS
AHR aryl hydrocarbon receptor 7p15 1(1/0/0) IDA
GLI3 GLI family zinc finger 3 7p13 1(1/0/0) TAS
TRIM24 tripartite motif containing 24 7q32-q34 1(1/0/0) IDA
RPA3 replication protein A3, 14kDa 7p21.3 1(1/0/0) TAS
LSM11 LSM11, U7 small nuclear RNA associated 5q33.3 1(1/0/0) IDA; TAS
ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein 20q11 1(0/0/1) IDA; TAS
FAM20B family with sequence similarity 20, member B 1q25.2 1(0/1/0) IDA
MTMR3 myotubularin related protein 3 22q12.2 1(0/1/0) IDA
NPAS3 neuronal PAS domain protein 3 14q13.1 2(1/1/0) IDA
MAPK10 mitogen-activated protein kinase 10 4q22-q23 1(0/1/0) TAS
GEMIN2 gem (nuclear organelle) associated protein 2 14q21.1 1(0/1/0) TAS
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 8p21.2 1(0/1/0) TAS
PER2 period circadian clock 2 2q37.3 7(1/6/0) IDA
GNAI2 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 3p21.31 1(0/1/0) IDA
KAT6B K(lysine) acetyltransferase 6B 10q22.2 1(1/0/0) TAS
ATF4 activating transcription factor 4 22q13.1 1(1/0/0) TAS
BRCA2 breast cancer 2, early onset 13q12-q13 1(1/0/0) IDA; TAS
ABCG1 ATP-binding cassette, sub-family G (WHITE), member 1 21q22.3 1(0/1/0) IDA
ESR1 estrogen receptor 1 6q24-q27 1(0/1/0) TAS
ELK3 ELK3, ETS-domain protein (SRF accessory protein 2) 12q23 1(0/1/0) IDA
CABIN1 calcineurin binding protein 1 22q11.23 1(0/0/1) IDA; TAS
UBXN7 UBX domain protein 7 3q29 1(0/1/0) IDA
XRCC4 X-ray repair complementing defective repair in Chinese hamster cells 4 5q14.2 1(0/1/0) IDA; TAS
ATF5 activating transcription factor 5 19q13.33 1(0/1/0) IDA
GCH1 GTP cyclohydrolase 1 14q22.1-q22.2 2(1/1/0) IDA
CREB1 cAMP responsive element binding protein 1 2q34 2(1/1/0) IDA; TAS
NRIP1 nuclear receptor interacting protein 1 21q11.2 1(0/1/0) IDA
CHD1L chromodomain helicase DNA binding protein 1-like 1q21.1 1(1/0/0) IDA
HSPA1A heat shock 70kDa protein 1A 6p21.3 2(2/0/0) TAS
SYNE1 spectrin repeat containing, nuclear envelope 1 6q25.2 6(3/2/1) IDA
PRKAG2 protein kinase, AMP-activated, gamma 2 non-catalytic subunit 7q35-q36 1(1/0/0) TAS
ZNF274 zinc finger protein 274 19q13.43 2(1/1/0) IDA
ERCC4 excision repair cross-complementation group 4 16p13.3 1(0/0/1) TAS
MED15 mediator complex subunit 15 22q11.2 1(0/1/0) IDA; TAS
RUVBL2 RuvB-like AAA ATPase 2 19q13.3 1(1/0/0) IDA; TAS
CDKN2A cyclin-dependent kinase inhibitor 2A 9p21 1(1/0/0) IDA[10360174]; TAS
FGFR2 fibroblast growth factor receptor 2 10q25.3-q26 2(1/1/0) IDA
ZMIZ1 zinc finger, MIZ-type containing 1 10q22.3 1(0/1/0) IDA
RORB RAR-related orphan receptor B 9q22 4(3/1/0) TAS
MBNL1 muscleblind-like splicing regulator 1 3q25 1(1/0/0) IDA
KAT5 K(lysine) acetyltransferase 5 11q13 2(0/2/0) IDA; TAS
NCBP2 nuclear cap binding protein subunit 2, 20kDa 3q29 1(0/1/0) IDA; TAS
POLN polymerase (DNA directed) nu 4p16.3 1(0/0/1) IDA
MAP2K6 mitogen-activated protein kinase kinase 6 17q 1(0/1/0) TAS
ARID1B AT rich interactive domain 1B (SWI1-like) 6q25.3 1(0/0/1) IDA
ALKBH8 alkB, alkylation repair homolog 8 (E. coli) 11q22.3 1(0/1/0) IDA
NUP107 nucleoporin 107kDa 12q14 1(1/0/0) IDA
RORA RAR-related orphan receptor A 15q21-q22 3(2/1/0) TAS
STK24 serine/threonine kinase 24 13q31.2-q32.3 2(1/1/0) TAS
TPP2 tripeptidyl peptidase II 13q32-q33 2(1/1/0) IDA
PALB2 partner and localizer of BRCA2 16p12.1 5(2/2/1) IDA; TAS
HS6ST2 heparan sulfate 6-O-sulfotransferase 2 Xq26.2 1(0/0/1) IDA
HTT huntingtin 4p16.3 1(0/0/1) IDA
TACC2 transforming, acidic coiled-coil containing protein 2 10q26 1(1/0/0) IDA
MTOR mechanistic target of rapamycin (serine/threonine kinase) 1p36 1(0/0/1) TAS
BDH1 3-hydroxybutyrate dehydrogenase, type 1 3q29 2(1/1/0) IDA
NFIA nuclear factor I/A 1p31.3-p31.2 1(0/1/0) IDA
PPP3CB protein phosphatase 3, catalytic subunit, beta isozyme 10q22.2 2(1/1/0) TAS