Gene Report

Basic Info
Approved Symbol NCOR2
Symbol Alias SMRT, SMRTE, TRAC-1, CTG26, TNRC14
Approved Name nuclear receptor corepressor 2
Previous Name nuclear receptor co-repressor 2
Location 12q24
Position chr12:124324415-124567589, -1
External Links HGNC: 7673
Entrez Gene: 9612
Ensembl: ENSG00000196498
UCSC: uc010tbb.2
No. of Studies 1 (Positive: 0; Negative: 1; trend: 0)
Overlap with SZ? NO
Overlap with MDD? NO
Gene related studies (count: 1)
Reference Tested Markers Statistical Values/Author Comments Result Category Comment on Study
Shink, E.,2005(b) SNP: rs2227277, rs2229840, rs2230944, rs3040832
Other variant: NCOR2_GC34E20A
Our results do not provide support for the existence of a common nsSNP (minor allele frequency >0.05) in the SMRT/N-CoR2 gene that would have a major effect on the BP phenotype in the SLSJ population. Negative Comment on Study
Gene functional annotation
Gene related GO terms (count: 23)

GO terms by PBA (count: 4)

GO terms by database search (count: 19)

Gene related KEGG pathways (count: 1)

KEGG pathways by PBA (count: 1)

KEGG pathways by database search (count: 0)

Gene related BioCarta pathways (count: 4)

Gene related interactors from protein-protein interactions data in HPRD (count: 59)

Related other genetic factors
Gene related SNPs (count: 6)

Literature-origin SNPs (count: 4)

LD-proxies (count: 2)

Gene related CNVs (count: 0)

Gene related other variants (count: 1)

Gene related regions (count: 6)

Overlap with schizophrenia (SZ) and major depressive disorder (MDD)
Gene relationship with SZ

Gene relationship with MDD

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Region: chr12:124324415..124567589 View in gBrowse
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