SNP |
Related Gene(s) |
Allele Change |
Risk Allele |
Statistical Values |
Author Comments |
Result Category |
rs1625579 |
MIR137HG
|
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Conditional FDR; SCZ loci given BD: FDR=0.011 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.10.
More...
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Positive
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rs11205362 |
PRPF3
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G/A |
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Conditional FDR; SCZ loci given BD: FDR=0.033 for SCZ and BD||Conjunction FDR; pleiotropic loci in SCZ and BD: FDR=0.033 for BD and SZ, Z-score=3.404 for BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.11. This SNP is with conjunction FDR<0.07 with schizophrenia and bipolar disorder considered jointly.
More...
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Positive
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rs4650608 |
PTGFR
IFI44L
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T/C |
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Conditional FDR; SCZ loci given BD: FDR=0.028 for SCZ and BD||Conditional FDR; BD loci given SCZ: P-value=0.001, FDR=0.64629, FDR=0.0425 for BD and SCZ||Conjunction FDR; pleiotropic loci in SCZ and BD: FDR=0.043 for BD and SZ, Z-score=3.289 for BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.08. This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. This SNP is with conjunction FDR<0.06 with schizophrenia and bipolar disorder considered jointly.
More...
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Positive
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rs4907103 |
LPAR3
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Conditional FDR; SCZ loci given BD: FDR=0.039 for SCZ and BD
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To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.09.
More...
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Positive
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rs10189138 |
VRK2
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Conditional FDR; SCZ loci given BD: FDR=0.038 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.14.
More...
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Positive
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rs11692886 |
SH3RF3
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Conditional FDR; SCZ loci given BD: FDR=0.035 for SCZ and BD
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To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.15.
More...
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Positive
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rs10495658 |
RN7SKP168
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Conditional FDR; SCZ loci given BD: FDR=0.044 for SCZ and BD
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To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.12.
More...
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Positive
|
rs813592 |
GCKR
FNDC4
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Conditional FDR; SCZ loci given BD: FDR=0.014 for SCZ and BD
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To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.13.
More...
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Positive
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rs17662626 |
|
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Conditional FDR; SCZ loci given BD: FDR=0.03 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.18.
More...
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Positive
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rs2675968 |
C2orf82
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Conditional FDR; SCZ loci given BD: FDR=0.021 for SCZ and BD
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To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.19.
More...
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Positive
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rs6435387 |
KIF5C
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Conditional FDR; SCZ loci given BD: FDR=0.02 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.16.
More...
|
Positive
|
rs17180327 |
|
|
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Conditional FDR; SCZ loci given BD: FDR=0.038 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.17.
More...
|
Positive
|
rs4687657 |
ITIH4
MUSTN1
|
G/T |
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Conditional FDR; SCZ loci given BD: FDR=0.028 for SCZ and BD||Conjunction FDR; pleiotropic loci in SCZ and BD: FDR=0.028 for BD and SZ, Z-score=3.787 for BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.22. This SNP is with conjunction FDR<0.09 with schizophrenia and bipolar disorder considered jointly.
More...
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Positive
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rs11130874 |
PTPRG
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Conditional FDR; SCZ loci given BD: FDR=0.03 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.23.
More...
|
Positive
|
rs4663627 |
AGAP1
|
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Conditional FDR; SCZ loci given BD: FDR=0.033 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.20.
More...
|
Positive
|
rs13072940 |
TRANK1
|
|
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Conditional FDR; SCZ loci given BD: FDR=0.013 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.21.
More...
|
Positive
|
rs4949526 |
|
|
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Conditional FDR; SCZ loci given BD: FDR=0.035 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.07.
More...
|
Positive
|
rs11579756 |
KAZN
|
|
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Conditional FDR; SCZ loci given BD: FDR=0.037 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.06.
More...
|
Positive
|
rs2252865 |
RERE
|
T/C |
|
Conditional FDR; SCZ loci given BD: FDR=0.03 for SCZ and BD, ||Conditional FDR; BD loci given SCZ: P-value=0.000219, FDR=0.44657, FDR=0.01306 for BD and SCZ||Conjunction FDR; pleiotropic loci in SCZ and BD: FDR=0.03 for BD and SZ, Z-score=3.696 for BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.05. This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. This SNP is with conjunction FDR<0.05 with schizophrenia and bipolar disorder considered jointly.
More...
|
Positive
|
rs2239037 |
CACNA1C
|
|
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Conditional FDR; BD loci given SCZ: P-value=0.000906, FDR=0.64629, FDR=0.03928 for BD and SCZ
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This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs10774037 |
CACNA1C
|
|
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Conditional FDR; BD loci given SCZ: P-value=0.000000242, FDR=0.01859, FDR=0.00161 for BD and SCZ
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This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs10883757 |
TRIM8
|
C/T |
|
Conditional FDR; BD loci given SCZ: P-value=0.00111, FDR=0.64629, FDR=0.03991 for BD and SCZ||Conjunction FDR; pleiotropic loci in SCZ and BD: FDR=0.04 for BD and SZ, Z-score=3.261 for BD
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. This SNP is with conjunction FDR<0.08 with schizophrenia and bipolar disorder considered jointly.
More...
|
Positive
|
rs17138230 |
TENM4
|
|
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Conditional FDR; BD loci given SCZ: P-value=0.0000143, FDR=0.18382, FDR=0.03822 for BD and SCZ
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This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs4390476 |
UBE2D3P4
|
|
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Conditional FDR; BD loci given SCZ: P-value=0.000203, FDR=0.44657, FDR=0.03843 for BD and SCZ
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This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs11160562 |
EML1
|
|
|
Conditional FDR; BD loci given SCZ: P-value=0.000693, FDR=0.60769, FDR=0.03496 for BD and SCZ
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This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs7296288 |
DHH
|
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Conditional FDR; BD loci given SCZ: P-value=0.0000288, FDR=0.20749, FDR=0.02777 for BD and SCZ
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This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs12427050 |
|
|
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Conditional FDR; BD loci given SCZ: P-value=0.0005, FDR=0.57626, FDR=0.04728 for BD and SCZ
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This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs4332037 |
MAD1L1
|
|
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Conditional FDR; BD loci given SCZ: P-value=0.0000397, FDR=0.22281, FDR=0.02918 for BD and SCZ
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This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs6461233 |
MAD1L1
|
|
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Conditional FDR; BD loci given SCZ: P-value=0.000519, FDR=0.57626, FDR=0.02711 for BD and SCZ
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This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs9371601 |
SYNE1
|
|
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Conditional FDR; BD loci given SCZ: P-value=0.0000011, FDR=0.06351, FDR=0.02196 for BD and SCZ
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This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs3823198 |
RPS6KA2
FAM103A2P
|
|
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Conditional FDR; BD loci given SCZ: P-value=0.0000416, FDR=0.22281, FDR=0.01779 for BD and SCZ
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This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs7083127 |
CACNB2
|
|
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Conditional FDR; BD loci given SCZ: P-value=0.00014, FDR=0.37364, FDR=0.02191 for BD and SCZ
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs10994359 |
ANK3
|
|
|
Conditional FDR; BD loci given SCZ: P-value=0.000000000812, FDR=0.00115, FDR=0.00001 for BD and SCZ
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs10277665 |
THSD7A
|
|
|
Conditional FDR; BD loci given SCZ: P-value=0.0000542, FDR=0.24328, FDR=0.01641 for BD and SCZ
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs6982836 |
RPL31P40
|
|
|
Conditional FDR; BD loci given SCZ: P-value=0.0000564, FDR=0.26909, FDR=0.04168 for BD and SCZ
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs281393 |
RASIP1
MAMSTR
|
|
|
Conditional FDR; BD loci given SCZ: P-value=0.0000599, FDR=0.26909, FDR=0.01293 for BD and SCZ
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs3809646 |
VPS9D1
ZNF276
VPS9D1-AS1
|
|
|
Conditional FDR; BD loci given SCZ: P-value=0.000576, FDR=0.60769, FDR=0.03171 for BD and SCZ
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs1424003 |
CDH11
|
|
|
Conditional FDR; BD loci given SCZ: P-value=0.0000554, FDR=0.24328, FDR=0.01641 for BD and SCZ
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs11863156 |
|
|
|
Conditional FDR; BD loci given SCZ: P-value=0.0000786, FDR=0.30029, FDR=0.00865 for BD and SCZ
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs1800359 |
ZNF276
FANCA
|
A/G |
|
Conjunction FDR; pleiotropic loci in SCZ and BD: FDR=0.035 for BD and SZ, Z-score=3.329 for BD
|
This SNP is with conjunction FDR<0.16 with schizophrenia and......
This SNP is with conjunction FDR<0.16 with schizophrenia and bipolar disorder considered jointly.
More...
|
Positive
|
rs3757440 |
MAD1L1
FTSJ2
|
A/G |
|
Conjunction FDR; pleiotropic loci in SCZ and BD: FDR=0.031 for BD and SZ, Z-score=3.49 for BD
|
This SNP is with conjunction FDR<0.11 with schizophrenia and......
This SNP is with conjunction FDR<0.11 with schizophrenia and bipolar disorder considered jointly.
More...
|
Positive
|
rs3746972 |
ITGB2
|
|
|
Conditional FDR; BD loci given SCZ: P-value=0.000142, FDR=0.41109, FDR=0.04369 for BD and SCZ
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs1051168 |
WDR73
NMB
|
|
|
Conditional FDR; SCZ loci given BD:: FDR=0.033 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs1078163 |
NTRK3
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.017 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs2304634 |
DNAJA3
|
|
|
Conditional FDR; SCZ loci given BD:: FDR=0.026 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs12708772 |
SHISA9
|
C/T |
|
Conditional FDR; SCZ loci given BD:: FDR=0.044 for SCZ and BD||Conditional FDR; BD loci given SCZ: P-value=0.000989, FDR=0.64629, FDR=0.04219 for BD and SCZ||Conjunction FDR; pleiotropic loci in SCZ and BD: FDR=0.044 for BD and SZ, Z-score=3.294 for BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.63. This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. This SNP is with conjunction FDR<0.14 with schizophrenia and bipolar disorder considered jointly.
More...
|
Positive
|
rs1502404 |
|
|
|
Conditional FDR; SCZ loci given BD:: FDR=0.04 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs724729 |
|
|
|
Conditional FDR; SCZ loci given BD:: FDR=0.038 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs1869901 |
PLCB2
PLCB2-AS1
|
|
|
Conditional FDR; SCZ loci given BD:: FDR=0.039 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs2414718 |
|
|
|
Conditional FDR; SCZ loci given BD:: FDR=0.025 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs7972947 |
CACNA1C
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.013 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs1006737 |
CACNA1C
|
A/G |
|
Conditional FDR; SCZ loci given BD: FDR=0.022 for SCZ and BD||Conjunction FDR; pleiotropic loci in SCZ and BD: FDR=0.022 for BD and SZ, Z-score=4.553 for BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.61. This SNP is with conjunction FDR<0.13 with schizophrenia and bipolar disorder considered jointly.
More...
|
Positive
|
rs4517638 |
DAOA
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.015 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs961196 |
TTC7B
|
C/T |
|
Conditional FDR; SCZ loci given BD:: FDR=0.044 for SCZ and BD||Conditional FDR; BD loci given SCZ: P-value=0.000296, FDR=0.50926, FDR=0.01872 for BD and SCZ||Conjunction FDR; pleiotropic loci in SCZ and BD: FDR=0.044 for BD and SZ, Z-score=3.618 for BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.63. This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. This SNP is with conjunction FDR<0.14 with schizophrenia and bipolar disorder considered jointly.
More...
|
Positive
|
rs6591348 |
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.027 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs17126243 |
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.027 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs11222395 |
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.032 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs7106715 |
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.039 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs2535629 |
ITIH3
|
|
|
Conditional FDR; BD loci given SCZ: P-value=0.0000129, FDR=0.17896, FDR=0.00279 for BD and SCZ
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs9834970 |
TRANK1
LRBA
|
C/T |
|
Conditional FDR; BD loci given SCZ: P-value=0.00052, FDR=0.57626, FDR=0.02711 for BD and SCZ||Conjunction FDR; pleiotropic loci in SCZ and BD: FDR=0.027 for BD and SZ, Z-score=3.47 for BD
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. This SNP is with conjunction FDR<0.08 with schizophrenia and bipolar disorder considered jointly.
More...
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Positive
|
rs3134942 |
NOTCH4
|
G/T |
|
Conditional FDR; BD loci given SCZ: P-value=0.00115, FDR=0.66028, FDR=0.04844 for BD and SCZ||Conjunction FDR; pleiotropic loci in SCZ and BD: FDR=0.048 for BD and SZ, Z-score=3.251 for BD
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. This SNP is with conjunction FDR<0.08 with schizophrenia and bipolar disorder considered jointly.
More...
|
Positive
|
rs2902101 |
TENM2
|
|
|
Conditional FDR; BD loci given SCZ: P-value=0.000104, FDR=0.33589, FDR=0.0357 for BD and SCZ
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs573140 |
SIPA1L2
|
|
|
Conditional FDR; BD loci given SCZ: P-value=0.00000658, FDR=0.15946, FDR=0.03009 for BD and SCZ
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs7521783 |
|
|
|
Conditional FDR; BD loci given SCZ: P-value=0.000558, FDR=0.57626, FDR=0.02503 for BD and SCZ
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs2271893 |
LMAN2L
|
|
|
Conditional FDR; BD loci given SCZ: P-value=0.0000185, FDR=0.18928, FDR=0.0096 for BD and SCZ
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs3911862 |
|
|
|
Conditional FDR; BD loci given SCZ: P-value=0.0000565, FDR=0.26909, FDR=0.04864 for BD and SCZ
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs5758209 |
|
|
|
Conditional FDR; SCZ loci given BD:: FDR=0.031 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs9621795 |
LARGE
|
|
|
Conditional FDR; SCZ loci given BD:: FDR=0.041 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs10776799 |
NGF
|
|
|
Conditional FDR; BD loci given SCZ: P-value=0.00000968, FDR=0.17368, FDR=0.02579 for BD and SCZ
|
This SNP is with conditional FDR<0.05 in schizophrenia given......
This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.
More...
|
Positive
|
rs28729663 |
RABL2B
|
|
|
Conditional FDR; SCZ loci given BD:: FDR=0.041 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs12966547 |
CCDC68
|
|
|
Conditional FDR; SCZ loci given BD:: FDR=0.019 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs4785714 |
ZNF276
|
|
|
Conditional FDR; SCZ loci given BD:: FDR=0.034 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs381523 |
PPM1F
|
A/G |
|
Conditional FDR; SCZ loci given BD:: FDR=0.038 for SCZ and BD||Conjunction FDR; pleiotropic loci in SCZ and BD: P-value=0.00128, FDR=0.66028, FDR=0.04536 for BD and SCZ||Conjunction FDR; pleiotropic loci in SCZ and BD: FDR=0.045 for BD and SZ, Z-score=3.22 for BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.63. This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. This SNP is with conjunction FDR<0.14 with schizophrenia and bipolar disorder considered jointly.
More...
|
Positive
|
rs159788 |
|
G/A |
|
Conditional FDR; SCZ loci given BD:: FDR=0.034 for SCZ and BD||Conditional FDR; BD loci given SCZ: P-value=0.000648, FDR=0.60769, FDR=0.0308 for BD and SCZ||Conjunction FDR; pleiotropic loci in SCZ and BD: FDR=0.034 for BD and SZ, Z-score=3.411 for BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.63. This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. This SNP is with conjunction FDR<0.14 with schizophrenia and bipolar disorder considered jointly.
More...
|
Positive
|
rs502771 |
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.039 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs9276601 |
HLA-DQB2
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.015 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs9268858 |
HLA-DRB9
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.041 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs9268862 |
HLA-DRB9
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.002 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs2284178 |
HCP5
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.036 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs805294 |
LY6G6C
C6orf25
LY6G6D
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.039 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs2523722 |
TRIM26
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.001 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs2596565 |
ZDHHC20P2
HLA-S
MICA
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.009 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs13190937 |
ZSCAN23
COX11P1
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.033 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.30.
More...
|
Positive
|
rs3130893 |
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.006 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.31.
More...
|
Positive
|
rs7749823 |
HIST1H1E
HIST1H2BD
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.005 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.28.
More...
|
Positive
|
rs17693963 |
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.001 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.29.
More...
|
Positive
|
rs9379780 |
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.024 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.26.
More...
|
Positive
|
rs198829 |
HIST1H2BC
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.027 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.27.
More...
|
Positive
|
rs9838229 |
CCDC39
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.045 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.24.
More...
|
Positive
|
rs13150700 |
SORBS2
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.048 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.25.
More...
|
Positive
|
rs676318 |
LRP5
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.023 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs4356203 |
PIK3C2A
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.029 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs11191580 |
NT5C2
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.005 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs10883817 |
CNNM2
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.02 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs2298278 |
SUFU
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.037 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs7895695 |
RRP12
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.018 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs2153522 |
ANK3
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.046 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs7084499 |
ANK3
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.04 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs6602217 |
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.015 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs2254884 |
ABCA1
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.032 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs7004633 |
MMP16
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.005 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs12543276 |
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.046 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs7787274 |
MAD1L1
FTSJ2
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.028 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs9462875 |
CUL9
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.036 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs1480380 |
HLA-DMA
HLA-DMB
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.01 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|
rs7383287 |
HLA-DOB
|
|
|
Conditional FDR; SCZ loci given BD: FDR=0.019 for SCZ and BD
|
To estimate the number of independent loci, we 'pruned' the ......
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32.
More...
|
Positive
|