Search SNP
Search Gene
Search CNV
Search Haplotype
Search Other Variant
Search Region
Search Pathway
Search Study
SNP Report
Name | rs7296288 dbSNP Ensembl | ||
---|---|---|---|
Location | chr12:49086185 - 49086185(1) | ||
Variant Alleles | A/C | ||
Ancestral Allele | C | ||
Minor Allele | C | ||
Minor Allele Frequence | 0.496406 | ||
Functional Annotation | downstream_gene_variant; upstream_gene_variant. | ||
Consequence to Transcript | downstream_gene_variant(ENST00000266991); upstream_gene_variant(ENST00000553174) | ||
No. of Studies | 4 (Positive: 3; Negative: 0; Trend: 1) | ||
Source | Literature | ||
Overlap with SZ? | YES | ||
Overlap with MDD? | NO |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Reference | Statistical Result | Description | Result Category |
---|---|---|---|
Andreassen OA, 2013 | Conditional FDR; BD loci given SCZ: FDR=0.02777 for BD and SCZ | This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. | Positive |