Search SNP
Search Gene
Search CNV
Search Haplotype
Search Other Variant
Search Region
Search Pathway
Search Study
SNP Report
Name | rs198829 dbSNP Ensembl | ||
---|---|---|---|
Location | chr6:26118665 - 26118665(1) | ||
Variant Alleles | A/G | ||
Ancestral Allele | A | ||
Minor Allele | G | ||
Minor Allele Frequence | 0.390176 | ||
Functional Annotation | downstream_gene_variant; intron_variant. | ||
Consequence to Transcript | downstream_gene_variant(ENST00000396984); intron_variant(ENST00000314332) | ||
No. of Studies | 1 (Positive: 1; Negative: 0; Trend: 0) | ||
Source | Literature | ||
Overlap with SZ? | YES | ||
Overlap with MDD? | NO |
Reference | Statistical Result | Description | Result Category |
---|---|---|---|
Andreassen OA, 2013 | Conditional FDR; SCZ loci given BD: P-value=0.0000218, FDR=0.088, FDR=0.027 for SCZ and BD | To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.27. | Positive |