BDgene

SNP Report

Basic Info
Name rs4390476 dbSNP Ensembl
Location chr13:84024435 - 84024435(1)
Variant Alleles A/C
Ancestral Allele A
Minor Allele C
Minor Allele Frequence 0.0265575
Functional Annotation downstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000441973)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Andreassen OA, 2013 Conditional FDR; BD loci given SCZ: P-value=0.000203, FDR=0....... Conditional FDR; BD loci given SCZ: P-value=0.000203, FDR=0.44657, FDR=0.03843 for BD and SCZ More... This SNP is with conditional FDR<0.05 in schizophrenia given...... This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
UBE2D3P4 ubiquitin-conjugating enzyme E2D 3 pseudogene 4 13q31.1 Mapped by Literature SNP

SNPs in LD with rs4390476 (count: 0) View in gBrowse (chr13:84024435..84024435 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Andreassen OA, 2013 Conditional FDR; BD loci given SCZ: FDR=0.03843 for BD and SCZ This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. Positive

Overlap with MDD from cross-disorder studies (count: 0)