SNP Report

Basic Info
Name |
rs4356203
dbSNP
Ensembl
|
Location |
chr11:17138601 - 17138601(1) |
Variant Alleles |
A/G |
Ancestral Allele |
A |
Minor Allele |
G |
Minor Allele Frequence |
0.22524 |
Functional Annotation |
downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant.
|
Consequence to Transcript |
downstream_gene_variant(ENST00000533645); intron_variant(ENST00000265970, ENST00000531428); non_coding_transcript_variant(ENST00000531428); upstream_gene_variant(ENST00000477436) |
No. of Studies |
2 (Positive: 1; Negative: 1; Trend: 0) |
Source |
Literature |
Overlap with SZ? |
YES
|
Overlap with MDD? |
NO
|

SNP related studies (count: 2)

SNP related genes (count: 1)

Overlap with SZ from cross-disorder studies (count: 2)
Reference |
Statistical Result |
Description |
Result Category |
Ruderfer, D. M., 2013 |
P-value=2.14E-05 for BP, P-value=5.53E-13 for BP+SZ, Het P-value=0.85 |
Most significant SNP in six genome-wide significant regions. |
Negative |
Andreassen OA, 2013 |
Conditional FDR; SCZ loci given BD: P-value=0.0000548, FDR=0.128, FDR=0.029 for SCZ and BD |
To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32. |
Positive |

Overlap with MDD from cross-disorder studies (count: 0)