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SNP Report
Name | rs17126243 dbSNP Ensembl | ||
---|---|---|---|
Location | chr11:122178967 - 122178967(1) | ||
Variant Alleles | G/A | ||
Ancestral Allele | G | ||
Minor Allele | A | ||
Minor Allele Frequence | 0.072484 | ||
Functional Annotation | downstream_gene_variant; intron_variant; non_coding_transcript_variant. | ||
Consequence to Transcript | downstream_gene_variant(ENST00000527474); intron_variant(ENST00000532350, ENST00000533109, ENST00000534297, ENST00000534782, ENST00000637700); non_coding_transcript_variant(ENST00000532350, ENST00000533109, ENST00000534297, ENST00000534782, ENST00000637700) | ||
No. of Studies | 1 (Positive: 1; Negative: 0; Trend: 0) | ||
Source | Literature | ||
Overlap with SZ? | YES | ||
Overlap with MDD? | NO |
Reference | Statistical Result | Description | Result Category |
---|---|---|---|
Andreassen OA, 2013 | Conditional FDR; SCZ loci given BD: P-value=0.0000129, FDR=0.08, FDR=0.027 for SCZ and BD | To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32. | Positive |