BDgene

SNP Report

Basic Info
Name rs2902101 dbSNP Ensembl
Location chr5:167021674 - 167021674(1)
Variant Alleles C/A
Ancestral Allele C
Minor Allele A
Minor Allele Frequence 0.408546
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Andreassen OA, 2013 Conditional FDR; BD loci given SCZ: P-value=0.000104, FDR=0....... Conditional FDR; BD loci given SCZ: P-value=0.000104, FDR=0.33589, FDR=0.0357 for BD and SCZ More... This SNP is with conditional FDR<0.05 in schizophrenia given...... This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TENM2 teneurin transmembrane protein 2 5q35 1(0/0/1)

SNPs in LD with rs2902101 (count: 0) View in gBrowse (chr5:167021674..167021674 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Andreassen OA, 2013 Conditional FDR; BD loci given SCZ: FDR=0.0357 for BD and SCZ This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. Positive

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016