SNP Report

Basic Info

Name	rs573140 dbSNP Ensembl
Location	chr1:232441535 - 232441535(1)
Variant Alleles	T/G
Ancestral Allele	T
Minor Allele	G
Minor Allele Frequence	0.201278
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000262861, ENST00000308942, ENST00000366630)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Andreassen OA, 2013			Conditional FDR; BD loci given SCZ: P-value=0.00000658, FDR=...... Conditional FDR; BD loci given SCZ: P-value=0.00000658, FDR=0.15946, FDR=0.03009 for BD and SCZ More...	This SNP is with conditional FDR<0.05 in schizophrenia given...... This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SIPA1L2	signal-induced proliferation-associated 1 like 2	1q42.2	Mapped by Literature SNP

SNPs in LD with rs573140 (count: 0) View in gBrowse (chr1:232441535..232441535 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Andreassen OA, 2013	Conditional FDR; BD loci given SCZ: FDR=0.03009 for BD and SCZ	This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.	Positive

Overlap with MDD from cross-disorder studies (count: 0)