SNP Report

Basic Info

Name	rs3823198 dbSNP Ensembl
Location	chr6:166583971 - 166583971(1)
Variant Alleles	G/T
Ancestral Allele	T
Minor Allele	G
Minor Allele Frequence	0.284944
Functional Annotation	downstream_gene_variant; intron_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000444122); intron_variant(ENST00000265678, ENST00000503859, ENST00000506565, ENST00000507350, ENST00000507371, ENST00000510118, ENST00000511034, ENST00000512860)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Andreassen OA, 2013			Conditional FDR; BD loci given SCZ: P-value=0.0000416, FDR=0...... Conditional FDR; BD loci given SCZ: P-value=0.0000416, FDR=0.22281, FDR=0.01779 for BD and SCZ More...	This SNP is with conditional FDR<0.05 in schizophrenia given...... This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. More...	Positive

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
FAM103A2P	family with sequence similarity 103, member A2 pseudogene	6q27	Mapped by Literature SNP
RPS6KA2	ribosomal protein S6 kinase, 90kDa, polypeptide 2	6q27	Mapped by Literature SNP

SNPs in LD with rs3823198 (count: 0) View in gBrowse (chr6:166583971..166583971 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Andreassen OA, 2013	Conditional FDR; BD loci given SCZ: FDR=0.01779 for BD and SCZ	This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'.	Positive

Overlap with MDD from cross-disorder studies (count: 0)