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SNP Report
Name | rs7383287 dbSNP Ensembl | ||
---|---|---|---|
Location | chrCHR_HSCHR6_MHC_SSTO_CTG1:32906186 - 32906186(1) | ||
Variant Alleles | A/G | ||
Ancestral Allele | A | ||
Minor Allele | G | ||
Minor Allele Frequence | 0.132388 | ||
Functional Annotation | intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant. | ||
Consequence to Transcript | intron_variant(ENST00000452392, ENST00000488325); NMD_transcript_variant(ENST00000488325); non_coding_transcript_exon_variant(ENST00000475235); non_coding_transcript_variant(ENST00000475235); synonymous_variant(ENST00000438763, ENST00000447394, ENST00000463161, ENST00000463161, ENST00000483576, ENST00000483576, ENST00000426644, ENST00000453971, ENST00000465683, ENST00000465683, ENST00000474748, ENST00000474748, ENST00000439310, ENST00000447178, ENST00000474604, ENST00000474604, ENST00000469995, ENST00000469995, ENST00000413252, ENST00000454286, ENST00000477041, ENST00000477041, ENST00000475173, ENST00000475173, ENST00000448690, ENST00000454969, ENST00000472450, ENST00000486158, ENST00000486158, ENST00000455155, ENST00000456406, ENST00000527042) | ||
No. of Studies | 1 (Positive: 1; Negative: 0; Trend: 0) | ||
Source | Literature | ||
Overlap with SZ? | YES | ||
Overlap with MDD? | NO |
SNPs in LD with rs7383287 (count: 0) View in gBrowse (chrCHR_HSCHR6_MHC_SSTO_CTG1:32906186..32906186 )
Reference | Statistical Result | Description | Result Category |
---|---|---|---|
Andreassen OA, 2013 | Conditional FDR; SCZ loci given BD: P-value=0.0000271, FDR=0.095, FDR=0.019 for SCZ and BD | To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32. | Positive |