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SNP Report
Name | rs3134942 dbSNP Ensembl | ||
---|---|---|---|
Location | chrCHR_HSCHR6_MHC_SSTO_CTG1:32208676 - 32208676(1) | ||
Variant Alleles | G/T | ||
Ancestral Allele | T | ||
Minor Allele | T | ||
Minor Allele Frequence | 0.0776757 | ||
Functional Annotation | non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant; upstream_gene_variant. | ||
Consequence to Transcript | non_coding_transcript_exon_variant(ENST00000474612); non_coding_transcript_variant(ENST00000474612); synonymous_variant(ENST00000375023); upstream_gene_variant(ENST00000491215, ENST00000466682, ENST00000466682, ENST00000425600, ENST00000487071, ENST00000485109, ENST00000485109, ENST00000437843, ENST00000470539, ENST00000471956, ENST00000471956, ENST00000454571, ENST00000474325, ENST00000465833, ENST00000465833, ENST00000439349, ENST00000474061, ENST00000476219, ENST00000476219, ENST00000383264, ENST00000468933, ENST00000495284, ENST00000495284, ENST00000457094, ENST00000497260) | ||
No. of Studies | 1 (Positive: 1; Negative: 0; Trend: 0) | ||
Source | Literature | ||
Overlap with SZ? | YES | ||
Overlap with MDD? | NO |
SNPs in LD with rs3134942 (count: 0) View in gBrowse (chrCHR_HSCHR6_MHC_SSTO_CTG1:32208676..32208676 )
Reference | Statistical Result | Description | Result Category |
---|---|---|---|
Andreassen OA, 2013 | Conditional FDR; BD loci given SCZ: FDR=0.04844 for BD and SCZ||Conjunction FDR; pleiotropic loci in SCZ and BD: FDR=0.048 for BD and SZ, Z-score=3.571 for SZ | This SNP is with conditional FDR<0.05 in schizophrenia given association with bipolar disorder after 'pruning'. This SNP is with conjunction FDR<0.08 with schizophrenia and bipolar disorder considered jointly. | Positive |