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SNP Report
Name | rs6435387 dbSNP Ensembl | ||
---|---|---|---|
Location | chrCHR_HSCHR2_2_CTG7_2:149014816 - 149014816(1) | ||
Variant Alleles | A/G | ||
Ancestral Allele | G | ||
Minor Allele | A | ||
Minor Allele Frequence | 0.0107827 | ||
Functional Annotation | intron_variant; non_coding_transcript_variant. | ||
Consequence to Transcript | intron_variant(ENST00000435030, ENST00000464066, ENST00000482151); non_coding_transcript_variant(ENST00000464066, ENST00000482151, ENST00000612114, ENST00000615027, ENST00000616530, ENST00000612114, ENST00000615027) | ||
No. of Studies | 1 (Positive: 1; Negative: 0; Trend: 0) | ||
Source | Literature | ||
Overlap with SZ? | YES | ||
Overlap with MDD? | NO |
Reference | Statistical Result | Description | Result Category |
---|---|---|---|
Andreassen OA, 2013 | Conditional FDR; SCZ loci given BD: P-value=0.0000428, FDR=0.115, FDR=0.02 for SCZ and BD | To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.16. | Positive |