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SNP Report
Name | rs502771 dbSNP Ensembl | ||
---|---|---|---|
Location | chrCHR_HSCHR6_MHC_SSTO_CTG1:32704736 - 32704736(1) | ||
Variant Alleles | T/C | ||
Ancestral Allele | T | ||
Minor Allele | C | ||
Minor Allele Frequence | 0.334065 | ||
Functional Annotation | upstream_gene_variant. | ||
Consequence to Transcript | upstream_gene_variant(ENST00000428566, ENST00000460546, ENST00000433975, ENST00000415796, ENST00000412634) | ||
No. of Studies | 1 (Positive: 1; Negative: 0; Trend: 0) | ||
Source | Literature | ||
Overlap with SZ? | YES | ||
Overlap with MDD? | NO |
SNPs in LD with rs502771 (count: 0) View in gBrowse (chrCHR_HSCHR6_MHC_SSTO_CTG1:32704736..32704736 )
Reference | Statistical Result | Description | Result Category |
---|---|---|---|
Andreassen OA, 2013 | Conditional FDR; SCZ loci given BD: P-value=0.0000297, FDR=0.104, FDR=0.039 for SCZ and BD | To estimate the number of independent loci, we 'pruned' the associated SNPs (removed SNPs with linkage disequilibrium (LD)>0.2), and identified a total of 58 independent loci with a significance threshold of conditional FDR<0.32. | Positive |