BDgene

Region Report

Basic Info
Region Name Chr 10
Chromosome Position chr10:0-133797422
No. of Studies (Positive/Negative/Trend)  3(0/2/1)

Region related studies (count: 3)
Reference Markers Statistical Values Author Comments Result Category
Murphy, V. E.,2000 D10S198 Linkage analysis: broad model, NPL = -0.943, P-value = 0.85;...... Linkage analysis: broad model, NPL = -0.943, P-value = 0.85; narrow model, NPL = -0.301, P-value = 0.68 More... No significant linkage was found in this region. No significant linkage was found in this region. Negative
Badner, J. A.,2002 Meta analysis: Location: 156, Single Analysis MSP = 0.1, Bes...... Meta analysis: Location: 156, Single Analysis MSP = 0.1, Best Analysis MSP = 0.1 More... No significant linkage was found in this region. No significant linkage was found in this region. Negative
Foroud, T.,2000 D10S1423 Genome-Wide Linkage Results: LOD = 1.5 on Model I, LOD = 2.5...... Genome-Wide Linkage Results: LOD = 1.5 on Model I, LOD = 2.5 on Model II, LOD = 1.3 on Model III More... Suggestive linkage was found in this region. Suggestive linkage was found in this region. Trend

Region related genes (count: 56)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PCDH15 protocadherin-related 15 10q21.1 4(2/1/1)
DIP2C DIP2 disco-interacting protein 2 homolog C (Drosophila) 10p15.3 1(0/1/0)
EGR2 early growth response 2 10q21.1 3(1/2/0)
NT5C2 5'-nucleotidase, cytosolic II 10q24.32 2(2/0/0)
GRID1 glutamate receptor, ionotropic, delta 1 10q22 1(0/0/1)
ZMIZ1 zinc finger, MIZ-type containing 1 10q22.3 1(0/1/0)
CACNB2 calcium channel, voltage-dependent, beta 2 subunit 10p12 3(2/1/0)
TACC2 transforming, acidic coiled-coil containing protein 2 10q26 1(1/0/0)
CTNNA3 catenin (cadherin-associated protein), alpha 3 10q21 1(1/0/0)
GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) 10p13-p11.2 1(0/1/0)
AS3MT arsenite methyltransferase 10q24.33 1(1/0/0)
SNCG synuclein, gamma (breast cancer-specific protein 1) 10q23.2-q23.3 1(0/1/0)
ADAM12 ADAM metallopeptidase domain 12 10q26 1(1/0/0)
PPP2R2D protein phosphatase 2, regulatory subunit B, delta 10q26.3 1(0/0/1)
LGI1 leucine-rich, glioma inactivated 1 10q24 1(0/1/0)
PIP4K2A phosphatidylinositol-5-phosphate 4-kinase, type II, alpha 10p12.2 4(1/3/0)
OPTN optineurin 10p14 1(0/0/1)
CFAP46 cilia and flagella associated protein 46 10q26.3 1(0/0/1)
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) 10q25.3 1(1/0/0)
CTBP2 C-terminal binding protein 2 10q26.13 1(1/0/0)
TLL2 tolloid-like 2 10q23-q24 1(1/0/0)
IL15RA interleukin 15 receptor, alpha 10p15.1 1(1/0/0)
CHAT choline O-acetyltransferase 10q11.2 1(0/1/0)
VCL vinculin 10q22.1-q23 1(0/0/1)
SVIL supervillin 10p11.2 1(0/1/0)
CXCL12 chemokine (C-X-C motif) ligand 12 10q11.1 1(0/0/1)
FAM107B family with sequence similarity 107, member B 10p14 1(1/0/0)
PNLIPRP1 pancreatic lipase-related protein 1 10q26.12 1(1/0/0)
PPP3CB protein phosphatase 3, catalytic subunit, beta isozyme 10q22.2 2(1/1/0)
TCERG1L transcription elongation regulator 1-like 10q26.3 1(0/0/1)
FGFR2 fibroblast growth factor receptor 2 10q25.3-q26 2(1/1/0)
CREM cAMP responsive element modulator 10p12.1-p11.1 1(0/1/0)
ANKRD16 ankyrin repeat domain 16 10p15.1 1(1/0/0)
SLC18A2 solute carrier family 18 (vesicular monoamine transporter), member 2 10q25 1(1/0/0)
ADRA2A adrenoceptor alpha 2A 10q25.2 1(0/1/0)
ZRANB1 zinc finger, RAN-binding domain containing 1 10q26.12 1(1/0/0)
KIAA1462 KIAA1462 10p12.1 1(0/1/0)
SLK STE20-like kinase 10q25.1 1(0/0/1)
ZWINT ZW10 interacting kinetochore protein 10q21-q22 1(1/0/0)
KAT6B K(lysine) acetyltransferase 6B 10q22.2 1(1/0/0)
TFAM transcription factor A, mitochondrial 10q21 1(1/0/0)
ANK3 ankyrin 3, node of Ranvier (ankyrin G) 10q21 17(13/3/1)
NRG3 neuregulin 3 10q23.1 2(0/2/0)
ATRNL1 attractin-like 1 10q26 1(0/1/0)
C10orf82 chromosome 10 open reading frame 82 10q26.12 1(1/0/0)
SIRT1 sirtuin 1 10q21 1(0/1/0)
GFRA1 GDNF family receptor alpha 1 10q25-q26 2(1/1/0)
PTPRE protein tyrosine phosphatase, receptor type, E 10q26 1(1/0/0)
BTBD16 BTB (POZ) domain containing 16 10q26.13 2(1/0/1)
MYOZ1 myozenin 1 10q22.1 1(0/1/0)
INA internexin neuronal intermediate filament protein, alpha 10q24 1(0/1/0)
HTR7 5-hydroxytryptamine (serotonin) receptor 7, adenylate cyclase-coupled 10q21-q24 2(0/2/0)
PRPF18 pre-mRNA processing factor 18 10p12.33 1(0/1/0)
C10orf120 chromosome 10 open reading frame 120 10q26.13 1(1/0/0)
KIF5B kinesin family member 5B 10p11.22 1(0/0/1)
FBXO18 F-box protein, helicase, 18 10p15.1 1(1/0/0)

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Region: chr10:0..133797422 View in gBrowse
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