Gene Report

Basic Info
Approved Symbol CXCL12
Previous Symbol SDF1A, SDF1B, SDF1
Symbol Alias SCYB12, SDF-1a, SDF-1b, PBSF, TLSF-a, TLSF-b, TPAR1
Approved Name chemokine (C-X-C motif) ligand 12
Previous Name stromal cell-derived factor 1
Location 10q11.1
Position chr10:44370165-44386493, -1
External Links HGNC: 10672
Entrez Gene: 6387
Ensembl: ENSG00000107562
UCSC: uc021ppm.1
No. of Studies 1 (Positive: 0; Negative: 0; trend: 1)
Overlap with SZ? NO
Overlap with MDD? NO
Gene related studies (count: 1)
Reference Tested Markers Statistical Values/Author Comments Result Category Comment on Study
Smith, E. N.,2011 SNP: rs1585913 Suggestive association of this gene was found. Trend Comment on Study
Gene functional annotation
Gene related GO terms (count: 47)

GO terms by PBA (count: 3)

GO terms by database search (count: 44)

Gene related KEGG pathways (count: 3)

KEGG pathways by PBA (count: 0)

KEGG pathways by database search (count: 3)

Gene related BioCarta pathways (count: 2)

BioCarta pathways by PBA (count: 0)

BioCarta pathways by database search (count: 2)

Gene related interactors from protein-protein interactions data in HPRD (count: 7)

Related other genetic factors
Gene related SNPs (count: 1)

Literature-origin SNPs (count: 1)

LD-proxies (count: 0)

Gene related CNVs (count: 0)

Gene related other variants (count: 0)

Gene related regions (count: 4)

Overlap with schizophrenia (SZ) and major depressive disorder (MDD)
Gene relationship with SZ

Gene relationship with MDD

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Region: chr10:44370165..44386493 View in gBrowse
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