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Meta-analysis Report
Comment on Study | View All Comments on Study |
Reference | Badner, J. A.,2002 PMID: 11986984 | ||
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Citation | Badner, J. A. and E. S. Gershon (2002). "Meta-analysis of whole-genome linkage scans of bipolar disorder and schizophrenia." Mol Psychiatry 7(4): 405-411. | ||
Disease Type | Bipolar Disorder & Schizophrenia | ||
Study Type | Genome-wide linkage study |
Samples | For bipolar disorder: 11 studies containing 353 families with 1228 affecteds;for schizophrenia:18 studies containing 681 families with 1929 affecteds | ||
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Statistic Method | Badner and Gershon (2001) presented a technique of meta-analysis of linkage data that could be applied to published genome scans. It combines the reported P-values of individual studies, after correcting each value for the size of the region containing a minimum P-value. Simulations demonstrated that the type I error rate was at least as low as that for a single genome scan and thus genome-wide significance criteria may be applied. Power to detect linkage was at least as high as the power of pooling the data from all the studies. It was used in this study. | ||
Basic Result | We found the strongest evidence for susceptibility loci on 13q (P < 6 x 10(-6)) and 22q (P < 1 x 10(-5)) for bipolar disorder, and on 8p (P < 2 x 10(-4)), 13q (P < 7 x 10(-5)), and 22q (P < 9 x 10(-5)) for schizophrenia. |
Region | Statistical Values | Author Comments | Result Category |
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Chr 7 | Meta analysis: Location: 17(116), Single Analysis MSP = 0.01, Best Analysis MSP = 0.01 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
Chr 6 | Meta analysis: Location: 1(138), Single Analysis MSP = 0.09, Best Analysis MSP = 0.01 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
Chr 9 | Meta analysis: Location: 123, Single Analysis MSP = 0.2, Best Analysis MSP = 0.08 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
Chr 8 | Meta analysis: Location: 153, Single Analysis MSP = 0.05, Best Analysis MSP = 0.04 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
Chr 3 | Meta analysis: Location: 209, Single Analysis MSP = 0.02, Best Analysis MSP = 0.05 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
Chr 22 | Meta analysis: Location: 36, Single Analysis MSP = 0.00003, Replication MSP = 0.006; Best Analysis MSP = 0.00001, Replication MSP = 0.003 | Suggestive linkage was found in this region. Suggestive linkage was found in this region. | Trend |
Chr 5 | Meta analysis: Location: 200, Single Analysis MSP = 0.2, Best Analysis MSP = 0.1 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
Chr 4 | Meta analysis: Location: 16, Single Analysis MSP = 0.007, Best Analysis MSP = 0.006 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
Chr 13 | Meta analysis: Location: 79, Single Analysis MSP = 0.000009, Replication MSP = 0.003; Best Analysis MSP = 0.000006, Replication MSP = 0.0007 | Suggestive linkage was found in this region. Suggestive linkage was found in this region. | Trend |
Chr 15 | Meta analysis: Location: 122, Single Analysis MSP = 0.2, Best Analysis MSP = 0.2 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
Chr 11 | Meta analysis: Location: 66, Single Analysis MSP = 0.01, Best Analysis MSP = 0.03 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
Chr 12 | Meta analysis: Location: 14(112), Single Analysis MSP = 0.2, Best Analysis MSP = 0.08 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
Chr 20 | Meta analysis: Location: 40, Single Analysis MSP = 0.003, Best Analysis MSP = 0.003 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
Chr 21 | Meta analysis: Location: 31, Single Analysis MSP = 0.006, Best Analysis MSP = 0.01 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
Chr 17 | Meta analysis: Location: 126, Single Analysis MSP = 0.3, Best Analysis MSP = 0.3 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
Chr 2 | Meta analysis: Location: 133, Single Analysis MSP = 0.04, Best Analysis MSP = 0.06 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
Chr 1 | Meta analysis: Location: 238, Single Analysis MSP = 0.01, Best Analysis MSP = 0.06 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
Chr 10 | Meta analysis: Location: 156, Single Analysis MSP = 0.1, Best Analysis MSP = 0.1 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
18p | Meta analysis: Location: 41, Single Analysis MSP = 0.003, Best Analysis MSP = 0.003 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
18q | Meta analysis: Location: 126, Single Analysis MSP = 0.004, Best Analysis MSP = 0.007 | No significant linkage was found in this region. No significant linkage was found in this region. | Negative |
Disease | Region Name | Statistical Values | Description | Result Category |
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SZ | 18q | Meta analysis:Location:35,Single Analysis MSP=0.005,Best Analysis MSP=0.09 | No significant linkage was found in this region. | Non-significant |
SZ | Chr 1 | Meta analysis:Location:171,Single Analysis MSP=0.0002,Best Analysis MSP=0.007 | No significant linkage was found in this region. | Non-significant |
SZ | Chr 11 | Meta analysis:Location:46,Single Analysis MSP=0.03,Best Analysis MSP=0.04 | No significant linkage was found in this region. | Non-significant |
SZ | Chr 12 | Meta analysis:Location:76(126),Single Analysis MSP=0.04,Best Analysis MSP=0.03 | No significant linkage was found in this region. | Non-significant |
SZ | Chr 13 | Meta analysis:Location:109,Single Analysis MSP=0.04,Best Analysis MSP=0.2 | Suggestive linkage was found in this region. | Trend |
SZ | Chr 15 | Meta analysis:Location:85,Single Analysis MSP=0.0004,Replication MSP=0.04;Best Analysis MSP=0.00007,Replication MSP=0.01 | No significant linkage was found in this region. | Non-significant |
SZ | Chr 17 | Meta analysis:Location:44,Single Analysis MSP=0.02,Best Analysis MSP=0.02 | No significant linkage was found in this region. | Non-significant |
SZ | Chr 2 | Meta analysis:Location:116,Single Analysis MSP=0.0008,Replication MSP=0.2;Best Analysis MSP=0.0005,Replication MSP=0.1 | No significant linkage was found in this region. | Non-significant |
SZ | Chr 22 | Meta analysis:Location:32,Single Analysis MSP=0.0002,Replication MSP=0.002;Best Analysis MSP=0.00009,Replication MSP=0.0009 | Suggestive linkage was found in this region. | Trend |
SZ | Chr 3 | Meta analysis:Location:124,Single Analysis MSP=0.04,Best Analysis MSP=0.2 | No significant linkage was found in this region. | Non-significant |
SZ | Chr 4 | Meta analysis:Location:61,Single Analysis MSP=0.03,Best Analysis MSP=0.05 | No significant linkage was found in this region. | Non-significant |
SZ | Chr 5 | Meta analysis:Location:164,Single Analysis MSP=0.1,Best Analysis MSP=0.1 | No significant linkage was found in this region. | Non-significant |
SZ | Chr 7 | Meta analysis:Location:114,Single Analysis MSP=0.004,Best Analysis MSP=0.002 | No significant linkage was found in this region. | Non-significant |
SZ | Chr 8 | Meta analysis:Location:50,Single Analysis MSP=0.0002,Replication MSP=0.009;Best Analysis MSP=0.0005,Replication MSP=0.02 | Suggestive linkage was found in this region. | Trend |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
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Last update: March 31, 2016