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Comment on Study | View All Comments on Study |
Reference | Soria, V.,2010 PMID: 20072116 |
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Citation | Soria, V., E. Martinez-Amoros, et al. (2010). "Differential association of circadian genes with mood disorders: CRY1 and NPAS2 are associated with unipolar major depression and CLOCK and VIP with bipolar disorder." Neuropsychopharmacology 35(6): 1279-1289. |
Disease Type | Bipolar Disorder & Major Depressive Disorder |
Study Design | case-control |
Study Type | Candidate-gene association study |
Sample Size | 335 MDD patients, 199 BD patients and 440 unrelated controls |
SNP/Region/Marker Size | 248 SNPs |
Predominant Ethnicity | Caucasian |
Population | Spanish |
Gender | female: 67.4% for patients,47.5% for controls |
Age Group | Adults : mean age at recruitment: 55.4 years, SD 15.5; mean age at onset of illness: 38.5 years, SD 15.3 for patients;43.1 years ,SD 14.9 for controls |
Sample Diagnosis | DSM |
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Sample Status | The clinical sample consisted of 534 unrelated Caucasoid patients of Spanish origin with MD (335 MDD and 199 BD) and 440 unrelated controls. Patients were consecutively recruited from two tertiary centers in Barcelona, Bellvitge University Hospital (HUB, n=445) and Hospital de la Santa Creu i Sant Pau (HSP, n=89) between 2004 and 2007.The control group consisted of 440 unrelated participants randomly selected from population registers, who were interviewed at Primary-care Centers in the same geographical area as the referral hospitals. |
Technique | genotyping |
Statistical Method | Allelic case-control association analysis was performed using X2-tests as implemented in Haploview software v 4.1. Multivariate methods based on logistic regression analyses were used to perform the genotype association analyses. |
Result Summary | An excess of transmissions and non transmissions was observed for the DRD4 4- and 2-repeat alleles respectively. The biased transmission showed a parent of origin effect (POE) since it was derived almost exclusively from the maternal meiosis (4-repeat allele maternally transmitted 40 times vs 20 times non-transmitted; chi(2) = 6.667; df = 1; P = 0.009; while paternally transmitted 26 times vs 21 times non-transmitted; chi(2) = 0.531; df = 1; P = 0.46). The analysis of TH did not reveal biased transmission of intron I VNTR alleles. Although replication of our study is necessary, the fact that DRD4 exhibit POE and is located on 11p15.5, in close proximity to a cluster of imprinted genes, suggests that genomic imprinting may be operating in bipolar disorder. |
SNP | Related Gene(s) | Allele Change | Risk Allele | Statistical Values | Author Comments | Result Category |
---|---|---|---|---|---|---|
rs11121029 | PER3 | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs11048995 | ARNTL2 | X2-tests: allele P-value = 0.042 | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs11133379 | CLOCK TMEM165 | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs11123857 | NPAS2 | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs11610949 | ARNTL2 | X2-tests: allele P-value = 0.032, Model Log-additive, genotype P-value = 0.015, OR(95%CI)=0.59 (0.38-0.92) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs11541353 | NPAS2 | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs12670064 | VIPR2 | X2-tests: allele P-value = 0.007, Model Log-additive, genotype P-value = 0.006, OR(95%CI)=0.63 (0.46-0.88) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs12504300 | CLOCK | X2-tests: allele P-value = 0.323, Model Recessive, genotype P-value = 0.03, OR(95%CI)=2.01 (1.08-3.74) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs13394520 | NPAS2 | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs13025524 | NPAS2 | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs17025005 | NPAS2 | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs1610037 | ADCYAP1 | X2-tests: allele P-value = 0.044, Model Recessive, genotype P-value = 0.019, OR(95%CI)=1.83 (1.11-3.01) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs17452383 | BTBD10 ARNTL | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs17083008 | VIP | X2-tests: allele P-value = 0.062, Model Recessive, genotype P-value = 0.004, OR(95%CI)=2.68 (1.37-5.22) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs17662394 | NPAS2 | X2-tests: allele P-value = 0.006, Model Log-additive, genotype P-value = 0.007, OR(95%CI)=1.60 (1.14-2.26) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs17500692 | ADCYAP1 | X2-tests: allele P-value = 0.038 | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs10462028 | CLOCK TMEM165 | X2-tests: allele P-value = 0.329, Model Codominant, genotype P-value = 0.002, OR(95%CI)=0.55 (0.38-0.80) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs10506018 | ARNTL2 | X2-tests: allele P-value = 0.38, Model Recessive, genotype P-value = 0.015, OR(95%CI)=3.43 (1.27-9.31) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs10842905 | ARNTL2 STK38L | X2-tests: allele P-value = 0.044, Model Log-additive, genotype P-value = 0.046, OR(95%CI)=0.76 (0.58-1.00) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs11022778 | ARNTL | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs11048994 | ARNTL2 | X2-tests: allele P-value = 0.377, Model Codominant, genotype P-value = 0.029, OR(95%CI)=0.67 (0.46-0.98) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs4640029 | MTERFD3 CRY1 | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs386551 | SPHK2 CA11 DBP SEC1P | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs3793227 | VIPR2 | X2-tests: allele P-value = 0.047, Model Log-additive, genotype P-value = 0.039, OR(95%CI)=0.66 (0.45-0.99) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs3789327 | ARNTL | X2-tests: allele P-value = 0.023, Model Recessive, genotype P-value = 0.013, OR(95%CI)=0.60 (0.39-0.90) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs4964060 | ARNTL2 | X2-tests: allele P-value = 0.017, Model Log-additive, genotype P-value = 0.026, OR(95%CI)=1.31 (1.03-1.67) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs4963954 | BHLHE41 | X2-tests: allele P-value = 0.035, Model Dominant, genotype P-value = 0.019, OR(95%CI)=0.66 (0.47-0.93) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs4851392 | NPAS2 | X2-tests: allele P-value = 0.024, Model Dominant, genotype P-value = 0.019, OR(95%CI)=0.65 (0.46-0.94) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs4774370 | RORA | X2-tests: allele P-value = 0.95, Model Recessive, genotype P-value = 0.031, OR(95%CI)=2.26 (1.09-4.67) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs7581886 | NPAS2 | X2-tests: allele P-value = 0.046, Model Dominant, genotype P-value = 0.038, OR(95%CI)=0.59 (0.35-0.99) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs714359 | MTERFD3 CRY1 | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs688136 | VIP | X2-tests: allele P-value = 0.627, Model Codominant, genotype P-value = 0.048, OR(95%CI)=0.73 (0.50-1.07) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs6850524 | CLOCK | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs969486 | ARNTL | X2-tests: allele P-value = 0.022, Model Log-additive, genotype P-value = 0.015, OR(95%CI)=0.69 (0.51-0.93) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs969485 | ARNTL | X2-tests: allele P-value = 0.015, Model Log-additive, genotype P-value = 0.01, OR(95%CI)=0.68 (0.50-0.91) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs900144 | ARNTL | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs885861 | VIPR2 LINC00689 | X2-tests: allele P-value = 0.262, Model Recessive, genotype P-value = 0.034, OR(95%CI)=1.61 (1.04-2.49) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs1997644 | CSNK1E | X2-tests: allele P-value = 0.396, Model Dominant, genotype P-value = 0.043, OR(95%CI)=1.53 (1.01-2.34) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs2070062 | CLOCK | X2-tests: allele P-value = 0.987, Model Codominant, genotype P-value = 0.005, OR(95%CI)=0.60 (0.41-0.88) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs1801260 | CLOCK TMEM165 | X2-tests: allele P-value = 0.97, Model Codominant, genotype P-value = 0.004, OR(95%CI)=0.61 (0.42-0.90) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs1982350 | ARNTL | X2-tests: allele P-value = 0.354, Model Recessive, genotype P-value = 0.05, OR(95%CI)=1.76 (1.01-3.07) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs2278749 | ARNTL | X2-tests: allele P-value = 0.096, Model Log-additive, genotype P-value = 0.044, OR(95%CI)=1.41 (1.01-1.98) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs2279287 | ARNTL | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs2071427 | NR1D1 THRA | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs2117713 | NPAS2 | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs2304673 | PER2 | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs2540352 | VIPR2 | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs228642 | PER3 | X2-tests: allele P-value = 0.202, Model Recessive, genotype P-value = 0.028, OR(95%CI)=1.66 (1.06-2.60) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs2287161 | CRY1 MTERFD3 | X2-tests: allele P-value = 0.036, Model Log-additive, genotype P-value = 0.043, OR(95%CI)=0.78 (0.62-0.99) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs3751222 | ARNTL2 | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs3754674 | NPAS2 | X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed in BD. No significant association was observed in BD. | Negative | ||
rs2970844 | ARNTL2 | X2-tests: allele P-value = 0.012, Model Log-additive, genotype P-value = 0.012, OR(95%CI)=0.62 (0.42-0.91) | Significant association was found in BD. Significant association was found in BD. | Positive | ||
rs35878285 | ARNTL2 | X2-tests: allele P-value = 0.039, Model Codominant, genotype P-value = 0.033, OR(95%CI)=5.53 (1.04-29.49) | Significant association was found in BD. Significant association was found in BD. | Positive |
Gene | Statistical Values/Author Comments | Result Category |
---|---|---|
VIP | Significant associations of VIP gene were found in BPD patients. Significant associations of VIP gene were found in BPD patients. | Positive |
CRY1 | Significant associations of CRY1 gene were found in BPD patients. Significant associations of CRY1 gene were found in BPD patients. | Positive |
VIPR2 | Significant associations of VIPR2 gene were found in BPD patients. Significant associations of VIPR2 gene were found in BPD patients. | Positive |
NPAS2 | Significant associations of NPAS2 gene were found in BPD patients. Significant associations of NPAS2 gene were found in BPD patients. | Positive |
PER3 | Significant associations of PER3 gene were found in BPD patients. Significant associations of PER3 gene were found in BPD patients. | Positive |
RORA | Significant associations of RORA gene were found in BPD patients. Significant associations of RORA gene were found in BPD patients. | Positive |
BHLHE41 | Significant associations of BHLHE41 gene were found in BPD patients. Significant associations of BHLHE41 gene were found in BPD patients. | Positive |
CLOCK | Significant associations of CLOCK gene were found in BPD patients. Significant associations of CLOCK gene were found in BPD patients. | Positive |
NR1D1 | No significant associations of NR1D1 gene were found in BPD patients. No significant associations of NR1D1 gene were found in BPD patients. | Negative |
PER2 | No significant associations of PER2 gene were found in BPD patients. No significant associations of PER2 gene were found in BPD patients. | Negative |
ARNTL2 | Significant associations of ARNTL2 gene were found in BPD patients. Significant associations of ARNTL2 gene were found in BPD patients. | Positive |
CSNK1E | Significant associations of CSNK1E gene were found in BPD patients. Significant associations of CSNK1E gene were found in BPD patients. | Positive |
ARNTL | Significant associations of ARNTL gene were found in BPD patients. Significant associations of ARNTL gene were found in BPD patients. | Positive |
DBP | No significant associations of DBP gene were found in BPD patients. No significant associations of DBP gene were found in BPD patients. | Negative |
ADCYAP1 | Significant associations of ADCYAP1 gene were found in BPD patients. Significant associations of ADCYAP1 gene were found in BPD patients. | Positive |
Disease | SNP | Related Gene(s) | Statistical Values | Description | Result Category |
---|---|---|---|---|---|
MDD | rs13394520 | NPAS2 | X2-tests:allele P-value = 0.23, Model Recessive, genotype P-value = 0.036, OR(95%CI)=1.59 (1.03-2.44) | Significant association was found. | Positive |
MDD | rs1610037 | ADCYAP1 | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs17025005 | NPAS2 | X2-tests:allele P-value = 0.092, Model Dominant, genotype P-value = 0.039, OR(95%CI)=0.72 (0.53-0.98) | Significant association was found. | Positive |
MDD | rs17083008 | VIP | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs17452383 | BTBD10 ARNTL | X2-tests:allele P-value = 0.938, Model Recessive, genotype P-value = 0.035, OR(95%CI)=3.00 (1.03-8.77) | Significant association was found. | Positive |
MDD | rs17500692 | ADCYAP1 | X2-tests:allele P-value = 0.038, Model Dominant, genotype P-value = 0.021, OR(95%CI)=0.67 (0.47-0.94) | Significant association was found. | Positive |
MDD | rs17662394 | NPAS2 | X2-tests:allele P-value = 0.014, Model Log-additive, genotype P-value = 0.022, OR(95%CI)=1.43 (1.05-1.95) | Significant association was found. | Positive |
MDD | rs1801260 | CLOCK TMEM165 | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs11121029 | PER3 | X2-tests:allele P-value = 0.769, Model Recessive, genotype P-value = 0.047, OR(95%CI)=0.43 (0.18-1.04) | Significant association was found. | Positive |
MDD | rs11123857 | NPAS2 | X2-tests:allele P-value = 2E-04, Model Log-additive, genotype P-value = 7.4E-04, OR(95%CI)=1.51 (1.19-1.92) | Significant association was found. | Positive |
MDD | rs11133379 | CLOCK TMEM165 | X2-tests:allele P-value = 0.167, Model Recessive, genotype P-value = 0.046, OR(95%CI)=1.53 (1.01-2.32) | Significant association was found. | Positive |
MDD | rs11541353 | NPAS2 | X2-tests:allele P-value = 0.009, Model Log-additive, genotype P-value = 0.028, OR(95%CI)=1.35 (1.03-1.76) | Significant association was found. | Positive |
MDD | rs11610949 | ARNTL2 | X2-tests:allele P-value = 0.043, Model Log-additive, genotype P-value = 0.018, OR(95%CI)=0.65 (0.46-0.94) | Significant association was found. | Positive |
MDD | rs12504300 | CLOCK | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs12670064 | VIPR2 | X2-tests:allele P-value = 0.157, Model Dominant, genotype P-value = 0.044, OR(95%CI)=0.73 (0.53-0.99) | Significant association was found. | Positive |
MDD | rs13025524 | NPAS2 | X2-tests:allele P-value = 0.017, Model Recessive, genotype P-value = 0.004, OR(95%CI)=0.52 (0.33-0.83) | Significant association was found. | Positive |
MDD | rs10506018 | ARNTL2 | X2-tests:allele P-value = 0.098, Model Codominant, genotype P-value = 0.009, OR(95%CI)=0.63 (0.44-0.88) | Significant association was found. | Positive |
MDD | rs10462028 | CLOCK TMEM165 | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs11022778 | ARNTL | X2-tests:allele P-value = 0.125, Model Recessive, genotype P-value = 0.022, OR(95%CI)=1.67 (1.08-2.58) | Significant association was found. | Positive |
MDD | rs10842905 | ARNTL2 STK38L | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs11048995 | ARNTL2 | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs11048994 | ARNTL2 | X2-tests:allele P-value = 0.156, Model Codominant, genotype P-value = 0.014, OR(95%CI)=0.65 (0.47-0.90) | Significant association was found. | Positive |
MDD | rs969486 | ARNTL | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs900144 | ARNTL | X2-tests:allele P-value = 0.181, Model Dominant, genotype P-value = 0.023, OR(95%CI)=0.69 (0.50-0.95) | Significant association was found. | Positive |
MDD | rs969485 | ARNTL | X2-tests:allele P-value = 0.713, Model Codominant, genotype P-value = 0.041, OR(95%CI)=0.75 (0.55-1.02) | Significant association was found. | Positive |
MDD | rs7581886 | NPAS2 | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs885861 | VIPR2 LINC00689 | X2-tests:allele P-value = 0.009, Model Recessive, genotype P-value = 0.004, OR(95%CI)=1.71 (1.18-2.46) | Significant association was found. | Positive |
MDD | rs688136 | VIP | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs714359 | MTERFD3 CRY1 | X2-tests:allele P-value = 0.032, Model Dominant, genotype P-value = 0.022, OR(95%CI)=0.70 (0.51-0.95) | Significant association was found. | Positive |
MDD | rs4964060 | ARNTL2 | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs6850524 | CLOCK | X2-tests:allele P-value = 0.056, Model Log-additive, genotype P-value = 0.015, OR(95%CI)=1.30 (1.05-1.61) | Significant association was found. | Positive |
MDD | rs4851392 | NPAS2 | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs4963954 | BHLHE41 | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs4640029 | MTERFD3 CRY1 | X2-tests:allele P-value = 0.295, Model Dominant, genotype P-value = 0.048, OR(95%CI)=1.40 (1.00-1.95) | Significant association was found. | Positive |
MDD | rs4774370 | RORA | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs3793227 | VIPR2 | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs386551 | SPHK2 CA11 DBP SEC1P | X2-tests:allele P-value = 0.104, Model Recessive, genotype P-value = 0.011, OR(95%CI)=2.15 (1.18-3.93) | Significant association was found. | Positive |
MDD | rs3789327 | ARNTL | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs3754674 | NPAS2 | X2-tests:allele P-value = 0.097, Model Recessive, genotype P-value = 0.016, OR(95%CI)=0.62 (0.41-0.92) | Significant association was found. | Positive |
MDD | rs3751222 | ARNTL2 | X2-tests:allele P-value = 0.055, Model Codominant, genotype P-value = 0.011, OR(95%CI)=0.54 (0.33-0.87) | Significant association was found. | Positive |
MDD | rs35878285 | ARNTL2 | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs2970844 | ARNTL2 | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs2540352 | VIPR2 | X2-tests:allele P-value = 0.035, Model Dominant, genotype P-value = 0.023, OR(95%CI)=0.67 (0.48-0.95) | Significant association was found. | Positive |
MDD | rs2304673 | PER2 | X2-tests:allele P-value = 0.076, Model Dominant, genotype P-value = 0.049, OR(95%CI)=1.39 (1.00-1.94) | Significant association was found. | Positive |
MDD | rs2287161 | CRY1 MTERFD3 | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs228642 | PER3 | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs2279287 | ARNTL | X2-tests:allele P-value = 0.178, Model Dominant, genotype P-value = 0.022, OR(95%CI)=0.71 (0.53-0.95) | Significant association was found. | Positive |
MDD | rs2278749 | ARNTL | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs2117713 | NPAS2 | X2-tests:allele P-value = 0.01, Model Log-additive, genotype P-value = 0.006, OR(95%CI)=1.51 (1.13-2.01) | Significant association was found. | Positive |
MDD | rs2071427 | NR1D1 THRA | X2-tests:allele P-value = 0.235, Model Recessive, genotype P-value = 0.039, OR(95%CI)=1.80 (1.03-3.16) | Significant association was found. | Positive |
MDD | rs2070062 | CLOCK | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs1997644 | CSNK1E | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
MDD | rs1982350 | ARNTL | X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model | No significant association was observed. | Negative |
Disease | Gene | Description | Result Category |
---|---|---|---|
MDD | CRY1 | Significant associations of CRY1 gene were found in MDD patients. | Positive |
MDD | NPAS2 | Significant associations of NPAS2 gene were found in MDD patients. | Positive |
MDD | ARNTL2 | Significant associations of ARNTL2 gene were found in MDD patients. | Positive |
MDD | ARNTL | Significant associations of ARNTL gene were found in MDD patients. | Positive |
MDD | BHLHE41 | No significant associations of BHLHE41 gene were found in MDD patients. | Negative |
MDD | CLOCK | Significant associations of CLOCK gene were found in MDD patients. | Positive |
MDD | CSNK1E | No significant associations of CSNK1E gene were found in MDD patients. | Negative |
MDD | PER2 | No significant associations of PER2 gene were found in MDD patients. | Positive |
MDD | RORA | No significant associations of RORA gene were found in MDD patients. | Negative |
MDD | ADCYAP1 | Significant associations of ADCYAP1 gene were found in MDD patients. | Positive |
MDD | DBP | Significant associations of DBP gene were found in MDD patients. | Positive |
MDD | PER3 | Significant associations of PER3 gene were found in MDD patients. | Positive |
MDD | NR1D1 | No significant associations of NR1D1 gene were found in MDD patients. | Positive |
MDD | VIP | No significant associations of VIP gene were found in MDD patients. | Negative |
MDD | VIPR2 | Significant associations of VIPR2 gene were found in MDD patients. | Positive |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
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Last update: March 31, 2016