BDgene

Study Report

Basic Info
Reference
Citation Soria, V., E. Martinez-Amoros, et al. (2010). "Differential association of circadian genes with mood disorders: CRY1 and NPAS2 are associated with unipolar major depression and CLOCK and VIP with bipolar disorder." Neuropsychopharmacology 35(6): 1279-1289.
Disease Type Bipolar Disorder & Major Depressive Disorder
Study Design case-control
Study Type Candidate-gene association study
Sample Size 335 MDD patients, 199 BD patients and 440 unrelated controls
SNP/Region/Marker Size 248 SNPs
Predominant Ethnicity Caucasian
Population Spanish
Gender female: 67.4% for patients,47.5% for controls
Age Group Adults : mean age at recruitment: 55.4 years, SD 15.5; mean age at onset of illness: 38.5 years, SD 15.3 for patients;43.1 years ,SD 14.9 for controls

Detail Info

Genetic factors reported by this study for BD
SNPs reported by this study for BD (count: 53)

Genes reported by this study for BD (count: 15)

Genetic factors reported by this study for SZ and/or MDD
SNPs reported by this study for SZ/MDD
Disease SNP Related Gene(s) Statistical Values Description Result Category
MDD rs13394520 NPAS2 X2-tests:allele P-value = 0.23, Model Recessive, genotype P-value = 0.036, OR(95%CI)=1.59 (1.03-2.44) Significant association was found. Positive
MDD rs1610037 ADCYAP1 X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs17025005 NPAS2 X2-tests:allele P-value = 0.092, Model Dominant, genotype P-value = 0.039, OR(95%CI)=0.72 (0.53-0.98) Significant association was found. Positive
MDD rs17083008 VIP X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs17452383 BTBD10 ARNTL X2-tests:allele P-value = 0.938, Model Recessive, genotype P-value = 0.035, OR(95%CI)=3.00 (1.03-8.77) Significant association was found. Positive
MDD rs17500692 ADCYAP1 X2-tests:allele P-value = 0.038, Model Dominant, genotype P-value = 0.021, OR(95%CI)=0.67 (0.47-0.94) Significant association was found. Positive
MDD rs17662394 NPAS2 X2-tests:allele P-value = 0.014, Model Log-additive, genotype P-value = 0.022, OR(95%CI)=1.43 (1.05-1.95) Significant association was found. Positive
MDD rs1801260 CLOCK TMEM165 X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs11121029 PER3 X2-tests:allele P-value = 0.769, Model Recessive, genotype P-value = 0.047, OR(95%CI)=0.43 (0.18-1.04) Significant association was found. Positive
MDD rs11123857 NPAS2 X2-tests:allele P-value = 2E-04, Model Log-additive, genotype P-value = 7.4E-04, OR(95%CI)=1.51 (1.19-1.92) Significant association was found. Positive
MDD rs11133379 CLOCK TMEM165 X2-tests:allele P-value = 0.167, Model Recessive, genotype P-value = 0.046, OR(95%CI)=1.53 (1.01-2.32) Significant association was found. Positive
MDD rs11541353 NPAS2 X2-tests:allele P-value = 0.009, Model Log-additive, genotype P-value = 0.028, OR(95%CI)=1.35 (1.03-1.76) Significant association was found. Positive
MDD rs11610949 ARNTL2 X2-tests:allele P-value = 0.043, Model Log-additive, genotype P-value = 0.018, OR(95%CI)=0.65 (0.46-0.94) Significant association was found. Positive
MDD rs12504300 CLOCK X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs12670064 VIPR2 X2-tests:allele P-value = 0.157, Model Dominant, genotype P-value = 0.044, OR(95%CI)=0.73 (0.53-0.99) Significant association was found. Positive
MDD rs13025524 NPAS2 X2-tests:allele P-value = 0.017, Model Recessive, genotype P-value = 0.004, OR(95%CI)=0.52 (0.33-0.83) Significant association was found. Positive
MDD rs10506018 ARNTL2 X2-tests:allele P-value = 0.098, Model Codominant, genotype P-value = 0.009, OR(95%CI)=0.63 (0.44-0.88) Significant association was found. Positive
MDD rs10462028 CLOCK TMEM165 X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs11022778 ARNTL X2-tests:allele P-value = 0.125, Model Recessive, genotype P-value = 0.022, OR(95%CI)=1.67 (1.08-2.58) Significant association was found. Positive
MDD rs10842905 ARNTL2 STK38L X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs11048995 ARNTL2 X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs11048994 ARNTL2 X2-tests:allele P-value = 0.156, Model Codominant, genotype P-value = 0.014, OR(95%CI)=0.65 (0.47-0.90) Significant association was found. Positive
MDD rs969486 ARNTL X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs900144 ARNTL X2-tests:allele P-value = 0.181, Model Dominant, genotype P-value = 0.023, OR(95%CI)=0.69 (0.50-0.95) Significant association was found. Positive
MDD rs969485 ARNTL X2-tests:allele P-value = 0.713, Model Codominant, genotype P-value = 0.041, OR(95%CI)=0.75 (0.55-1.02) Significant association was found. Positive
MDD rs7581886 NPAS2 X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs885861 VIPR2 LINC00689 X2-tests:allele P-value = 0.009, Model Recessive, genotype P-value = 0.004, OR(95%CI)=1.71 (1.18-2.46) Significant association was found. Positive
MDD rs688136 VIP X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs714359 MTERFD3 CRY1 X2-tests:allele P-value = 0.032, Model Dominant, genotype P-value = 0.022, OR(95%CI)=0.70 (0.51-0.95) Significant association was found. Positive
MDD rs4964060 ARNTL2 X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs6850524 CLOCK X2-tests:allele P-value = 0.056, Model Log-additive, genotype P-value = 0.015, OR(95%CI)=1.30 (1.05-1.61) Significant association was found. Positive
MDD rs4851392 NPAS2 X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs4963954 BHLHE41 X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs4640029 MTERFD3 CRY1 X2-tests:allele P-value = 0.295, Model Dominant, genotype P-value = 0.048, OR(95%CI)=1.40 (1.00-1.95) Significant association was found. Positive
MDD rs4774370 RORA X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs3793227 VIPR2 X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs386551 SPHK2 CA11 DBP SEC1P X2-tests:allele P-value = 0.104, Model Recessive, genotype P-value = 0.011, OR(95%CI)=2.15 (1.18-3.93) Significant association was found. Positive
MDD rs3789327 ARNTL X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs3754674 NPAS2 X2-tests:allele P-value = 0.097, Model Recessive, genotype P-value = 0.016, OR(95%CI)=0.62 (0.41-0.92) Significant association was found. Positive
MDD rs3751222 ARNTL2 X2-tests:allele P-value = 0.055, Model Codominant, genotype P-value = 0.011, OR(95%CI)=0.54 (0.33-0.87) Significant association was found. Positive
MDD rs35878285 ARNTL2 X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs2970844 ARNTL2 X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs2540352 VIPR2 X2-tests:allele P-value = 0.035, Model Dominant, genotype P-value = 0.023, OR(95%CI)=0.67 (0.48-0.95) Significant association was found. Positive
MDD rs2304673 PER2 X2-tests:allele P-value = 0.076, Model Dominant, genotype P-value = 0.049, OR(95%CI)=1.39 (1.00-1.94) Significant association was found. Positive
MDD rs2287161 CRY1 MTERFD3 X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs228642 PER3 X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs2279287 ARNTL X2-tests:allele P-value = 0.178, Model Dominant, genotype P-value = 0.022, OR(95%CI)=0.71 (0.53-0.95) Significant association was found. Positive
MDD rs2278749 ARNTL X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs2117713 NPAS2 X2-tests:allele P-value = 0.01, Model Log-additive, genotype P-value = 0.006, OR(95%CI)=1.51 (1.13-2.01) Significant association was found. Positive
MDD rs2071427 NR1D1 THRA X2-tests:allele P-value = 0.235, Model Recessive, genotype P-value = 0.039, OR(95%CI)=1.80 (1.03-3.16) Significant association was found. Positive
MDD rs2070062 CLOCK X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs1997644 CSNK1E X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative
MDD rs1982350 ARNTL X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative

Genes reported by this study for SZ/MDD
Disease Gene Description Result Category
MDD CRY1 Significant associations of CRY1 gene were found in MDD patients. Positive
MDD NPAS2 Significant associations of NPAS2 gene were found in MDD patients. Positive
MDD ARNTL2 Significant associations of ARNTL2 gene were found in MDD patients. Positive
MDD ARNTL Significant associations of ARNTL gene were found in MDD patients. Positive
MDD BHLHE41 No significant associations of BHLHE41 gene were found in MDD patients. Negative
MDD CLOCK Significant associations of CLOCK gene were found in MDD patients. Positive
MDD CSNK1E No significant associations of CSNK1E gene were found in MDD patients. Negative
MDD PER2 No significant associations of PER2 gene were found in MDD patients. Positive
MDD RORA No significant associations of RORA gene were found in MDD patients. Negative
MDD ADCYAP1 Significant associations of ADCYAP1 gene were found in MDD patients. Positive
MDD DBP Significant associations of DBP gene were found in MDD patients. Positive
MDD PER3 Significant associations of PER3 gene were found in MDD patients. Positive
MDD NR1D1 No significant associations of NR1D1 gene were found in MDD patients. Positive
MDD VIP No significant associations of VIP gene were found in MDD patients. Negative
MDD VIPR2 Significant associations of VIPR2 gene were found in MDD patients. Positive