SNP Report

Basic Info

Name	rs969485 dbSNP Ensembl
Location	chr11:13381496 - 13381496(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	G
Minor Allele Frequence	0.390974
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000529390); intron_variant(ENST00000389707, ENST00000401424, ENST00000403290, ENST00000403482, ENST00000403510, ENST00000472842, ENST00000524392); NMD_transcript_variant(ENST00000524392); non_coding_transcript_variant(ENST00000472842)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	YES

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Soria, V.,2010			X²-tests: allele P-value = 0.015, Model Log-addit...... X²-tests: allele P-value = 0.015, Model Log-additive, genotype P-value = 0.01, OR(95%CI)=0.68 (0.50-0.91) More...	Significant association was found in BD. Significant association was found in BD.	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ARNTL	aryl hydrocarbon receptor nuclear translocator-like	11p15	7(5/2/0)

SNPs in LD with rs969485 (count: 0) View in gBrowse (chr11:13381496..13381496 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Soria, V.,2010	X²-tests:allele P-value = 0.713, Model Codominant, genotype P-value = 0.041, OR(95%CI)=0.75 (0.55-1.02)	Significant association was found.	Positive