Gene Report

Basic information

Functional annotation

Related other genetic factors

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Basic Info

Approved Symbol	TMEM165
Symbol Alias	TMPT27, TPARL, GDT1
Approved Name	transmembrane protein 165
Name Alias	TPA regulated locus
Location	4q12
Position	chr4:55395957-55453397, 1
External Links	HGNC: 30760 Entrez Gene: 55858 Ensembl: ENSG00000134851 UCSC: uc003hax.3
No. of Studies	0. Gene is from "Mapped by Literature SNP "

Gene functional annotation

Gene related GO terms (count: 0)

Gene related KEGG pathways (count: 0)

Gene related BioCarta pathways (count: 0)

Gene related interactors from protein-protein interactions data in HPRD (count: 0)

Related other genetic factors

Gene related SNPs (count: 58)

Literature-origin SNPs (count: 9)

rs_ID	Location	Functional Annotation	No. of Studies (Positive/Negative/Trend)
rs1801260	chr4:55435202 - 55435202(1)	3_prime_UTR_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	6(3/3/0)
rs11133379	chr4:55439944 - 55439944(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant	1(0/1/0)
rs3736544	chr4:55443825 - 55443825(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant; upstream_gene_variant	3(1/2/0)
rs534654	chr4:55424053 - 55424053(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	1(1/0/0)
rs11932595	chr4:55457430 - 55457430(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1(1/0/0)
rs3749474	chr4:55434518 - 55434518(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	2(0/2/0)
rs2412648	chr4:55454900 - 55454900(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1(0/1/0)
rs10462028	chr4:55432133 - 55432133(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant	1(1/0/0)
rs3805148	chr4:55440643 - 55440643(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant	1(1/0/0)

LD-proxies (count: 49)

rs_ID	Location	Functional Annotation
rs480479	chr4:55408163 - 55408163(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs473005	chr4:55421958 - 55421958(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs1011095	chr4:55398774 - 55398774(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; upstream_gene_variant
rs7660054	chr4:55402340 - 55402340(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs6802	chr4:55425934 - 55425934(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant
rs483978	chr4:55394922 - 55394922(1)	intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs17721497	chr4:55445081 - 55445081(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs1048004	chr4:55434042 - 55434042(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant
rs550144	chr4:55415317 - 55415317(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant
rs41324951	chr4:55422576 - 55422576(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs693367	chr4:55394495 - 55394495(1)	intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs880358	chr4:55410311 - 55410311(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs17776975	chr4:55410728 - 55410728(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs1056545	chr4:55430730 - 55430730(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant
rs504836	chr4:55419138 - 55419138(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs471546	chr4:55420446 - 55420446(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs549564	chr4:55420550 - 55420550(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs11240	chr4:55453183 - 55453183(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; upstream_gene_variant
rs13121235	chr4:55445780 - 55445780(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs1522106	chr4:55441047 - 55441047(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs3805147	chr4:55440563 - 55440563(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs6832769	chr4:55432027 - 55432027(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant
rs2412646	chr4:55452605 - 55452605(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; upstream_gene_variant
rs6824955	chr4:55450969 - 55450969(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; upstream_gene_variant
rs11133383	chr4:55450878 - 55450878(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; upstream_gene_variant
rs6811520	chr4:55449011 - 55449011(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs11942279	chr4:55439652 - 55439652(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs3805150	chr4:55446869 - 55446869(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs1056547	chr4:55430596 - 55430596(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant
rs11133378	chr4:55439472 - 55439472(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs12651640	chr4:55454154 - 55454154(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs11943456	chr4:55410167 - 55410167(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs1554483	chr4:55455650 - 55455650(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant
rs6858749	chr4:55424270 - 55424270(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant
rs6849474	chr4:55452295 - 55452295(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; missense_variant; NMD_transcript_variant; upstream_gene_variant
rs11732723	chr4:55424391 - 55424391(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant
rs4864996	chr4:55452921 - 55452921(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; upstream_gene_variant
rs12641881	chr4:55401306 - 55401306(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs2048564	chr4:55407965 - 55407965(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs6828570	chr4:55431595 - 55431595(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant
rs13120134	chr4:55415153 - 55415153(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs11133380	chr4:55441110 - 55441110(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs1047354	chr4:55429416 - 55429416(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant
rs11945371	chr4:55409063 - 55409063(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs11133377	chr4:55413708 - 55413708(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs3792603	chr4:55435891 - 55435891(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs12500686	chr4:55457922 - 55457922(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant
rs10517346	chr4:55457027 - 55457027(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant
rs1464490	chr4:55456620 - 55456620(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant

Gene related CNVs (count: 0)

Gene related other variants (count: 0)

Gene related regions (count: 0)

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Region: chr4:55395957..55453397 View in gBrowse