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SNP Report
Name | rs386551 dbSNP Ensembl | ||
---|---|---|---|
Location | chr19:48635029 - 48635029(1) | ||
Variant Alleles | C/G | ||
Ancestral Allele | G | ||
Minor Allele | C | ||
Minor Allele Frequence | 0.411941 | ||
Functional Annotation | downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant. | ||
Consequence to Transcript | downstream_gene_variant(ENST00000084798, ENST00000245222, ENST00000340932, ENST00000594088, ENST00000596080, ENST00000597434, ENST00000598088, ENST00000599029, ENST00000599267, ENST00000599748); intron_variant(ENST00000222122, ENST00000601104); non_coding_transcript_exon_variant(ENST00000594723); non_coding_transcript_variant(ENST00000594723); upstream_gene_variant(ENST00000430145, ENST00000474419, ENST00000483163, ENST00000593500, ENST00000599385) | ||
No. of Studies | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
Source | Literature | ||
Overlap with SZ? | NO | ||
Overlap with MDD? | YES |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Reference | Statistical Result | Description | Result Category |
---|---|---|---|
Soria, V.,2010 | X2-tests:allele P-value = 0.104, Model Recessive, genotype P-value = 0.011, OR(95%CI)=2.15 (1.18-3.93) | Significant association was found. | Positive |