BDgene

SNP Report

Basic Info
Name rs900144 dbSNP Ensembl
Location chr11:13272721 - 13272721(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.327077
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000527998, ENST00000529050, ENST00000534544)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Soria, V.,2010 X2-tests: allele P-value > 0.05, genotype P-value...... X2-tests: allele P-value > 0.05, genotype P-value > 0.05 in all model More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ARNTL aryl hydrocarbon receptor nuclear translocator-like 11p15 7(5/2/0)

SNPs in LD with rs900144 (count: 16) View in gBrowse (chr11:13246839..13272721 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 16)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Soria, V.,2010 X2-tests:allele P-value = 0.181, Model Dominant, genotype P-value = 0.023, OR(95%CI)=0.69 (0.50-0.95) Significant association was found. Positive