SNP Report

Basic Info
Name rs3793227 dbSNP Ensembl
Location chr7:159093237 - 159093237(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.124201
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000262178, ENST00000377633, ENST00000402066)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Soria, V.,2010 X2-tests: allele P-value = 0.047, Model Log-addit...... X2-tests: allele P-value = 0.047, Model Log-additive, genotype P-value = 0.039, OR(95%CI)=0.66 (0.45-0.99) More... Significant association was found in BD. Significant association was found in BD. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
VIPR2 vasoactive intestinal peptide receptor 2 7q36.3 1(1/0/0)

SNPs in LD with rs3793227 (count: 10) View in gBrowse (chr7:159070845..159139768 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 10)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Soria, V.,2010 X2-tests:allele P-value > 0.05, genotype P-value > 0.05 in all model No significant association was observed. Negative