Region Report

Basic Info

Region Name	Chr 9
Chromosome Position	chr9:0-138394717
No. of Studies (Positive/Negative/Trend)	3(0/3/0)

Region related studies (count: 3)

Reference	Markers	Statistical Values	Author Comments	Result Category
Avramopoulos, D., 2007	D9S269 (BPI, BPII), D9S288 (BPI, restricted)	P-value = 0.035, NPL = 1.82, Dominant Max HLOD = 0.87, Re...... P-value = 0.035, NPL = 1.82, Dominant Max HLOD = 0.87, Recessive Max HLOD = 1.23 in Ashkenazi pedigrees; P-value = 0.069, NPL = 1.5, Dominant Max HLOD = 0.52, Recessive Max HLOD = 0.88 in BPI-restricted pedigrees More...	the absolute value of the resulting scores remained moderate the absolute value of the resulting scores remained moderate	Negative
Badner, J. A.,2002		Meta analysis: Location: 123, Single Analysis MSP = 0.2, Bes...... Meta analysis: Location: 123, Single Analysis MSP = 0.2, Best Analysis MSP = 0.08 More...	No significant linkage was found in this region. No significant linkage was found in this region.	Negative
Murphy, V. E.,2000	D9S165	Linkage analysis: broad model, NPL = -0.261, P-value = 0.6; ...... Linkage analysis: broad model, NPL = -0.261, P-value = 0.6; narrow model, NPL = -0.404, P-value = 0.75 More...	No significant linkage was found in this region. No significant linkage was found in this region.	Negative

Region related genes (count: 40)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ASTN2	astrotactin 2	9q33	1(1/0/0)
GTF3C5	general transcription factor IIIC, polypeptide 5, 63kDa	9q34.13	1(0/1/0)
SURF6	surfeit 6	9q33-q34	1(0/1/0)
TAL2	T-cell acute lymphocytic leukemia 2	9q32	1(0/0/1)
CACNA1B	calcium channel, voltage-dependent, N type, alpha 1B subunit	9q34	1(1/0/0)
GRIN1	glutamate receptor, ionotropic, N-methyl D-aspartate 1	9q34.3	3(2/1/0)
CBWD1	COBW domain containing 1	9p24.3	1(0/0/1)
SLC1A1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	9p24	1(1/0/0)
TLE4	transducin-like enhancer of split 4	9q21.32	2(1/1/0)
ANXA1	annexin A1	9q21.13	1(0/0/1)
FRMD3	FERM domain containing 3	9q21.33	1(0/1/0)
ELAVL2	ELAV like neuron-specific RNA binding protein 2	9p21	2(0/0/2)
PTPRD	protein tyrosine phosphatase, receptor type, D	9p24.1-p23	1(0/0/1)
DBH	dopamine beta-hydroxylase (dopamine beta-monooxygenase)	9q34	3(1/2/0)
GRIN3A	glutamate receptor, ionotropic, N-methyl-D-aspartate 3A	9q31.1	1(0/1/0)
RORB	RAR-related orphan receptor B	9q22	4(3/1/0)
NFIL3	nuclear factor, interleukin 3 regulated	9q22	2(0/2/0)
TDRD7	tudor domain containing 7	9q22.33	1(1/0/0)
SPTLC1	serine palmitoyltransferase, long chain base subunit 1	9q22.31	1(0/1/0)
GGTA1P	glycoprotein, alpha-galactosyltransferase 1 pseudogene	9q33.2	1(1/0/0)
DIRAS2	DIRAS family, GTP-binding RAS-like 2	9q22.32	1(1/0/0)
CDKN2A	cyclin-dependent kinase inhibitor 2A	9p21	1(1/0/0)
GABBR2	gamma-aminobutyric acid (GABA) B receptor, 2	9q22.1-q22.3	2(0/2/0)
PCSK5	proprotein convertase subtilisin/kexin type 5	9q21.13	1(1/0/0)
ADAMTSL1	ADAMTS-like 1	9p21.3	1(0/1/0)
NUP214	nucleoporin 214kDa	9q34	1(0/1/0)
SVEP1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	9q31-q32	1(1/0/0)
DEC1	deleted in esophageal cancer 1	9q32	1(1/0/0)
ATP6V1G1	ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1	9q33.1	1(0/0/1)
C9orf171	chromosome 9 open reading frame 171	9q34.13	1(0/1/0)
OLFM1	olfactomedin 1	9q34.3	1(1/0/0)
OR1B1	olfactory receptor, family 1, subfamily B, member 1 (gene/pseudogene)	9q33.2	1(0/1/0)
LINGO2	leucine rich repeat and Ig domain containing 2	9p21.2	1(0/0/1)
C9orf50	chromosome 9 open reading frame 50	9q34.2	1(0/0/1)
GFI1B	growth factor independent 1B transcription repressor	9q34.13	1(0/1/0)
DFNB31	deafness, autosomal recessive 31	9q32	3(2/1/0)
ROR2	receptor tyrosine kinase-like orphan receptor 2	9q22	1(0/1/0)
TLR4	toll-like receptor 4	9q33.1	1(1/0/0)
HSPA5	heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)	9q33.3	1(0/1/0)
NTRK2	neurotrophic tyrosine kinase, receptor, type 2	9q22.1	3(1/1/1)

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Region: chr9:0..138394717 View in gBrowse