BDgene

GO Report

Basic Info
ID GO:0043565
Name sequence-specific DNA binding
Type molecular function
No. of Genes in BDgene  29
Source Pathway by PBA

PBA Result
Pathway Name in Paper Source Reference Data Set Tool Result Parameters Result Link
GO: 0043565: sequence-speciWc DNA binding PBA paper Askland, K.,2009 WTCCC Bayesian genotypic Fisher's exact test P < 0.05 from the WTCCC PBAs
GO: 0043565: sequence-speciWc DNA binding PBA paper Askland, K.,2009 WTCCC Frequentist genotypic Fisher's exact test P < 0.05 from the WTCCC PBAs

GO related genes in BDgene (count: 29)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend) Evidence[PMID]
FOXO3 forkhead box O3 6q21 1(1/0/0) IDA[10102273]
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) 10q25.3 1(1/0/0) IDA[14661054]; IMP[16532032]
TSNAX translin-associated factor X 1q42.2 4(3/1/0) IBA
TFAP2B transcription factor AP-2 beta (activating enhancer binding protein 2 beta) 6p12 1(0/1/0) IDA[11505339]
GSC2 goosecoid homeobox 2 22q11.21 1(0/1/0) IEA
ATF4 activating transcription factor 4 22q13.1 1(1/0/0) IDA[22915762]
NR2E1 nuclear receptor subfamily 2, group E, member 1 6q21 1(1/0/0) IEA
THRA thyroid hormone receptor, alpha 17q21.1 1(1/0/0) IEA
CLOCK clock circadian regulator 4q12 12(5/7/0) ISS
CUX2 cut-like homeobox 2 12q24.12 3(1/2/0) IDA[15656993]
ARNTL aryl hydrocarbon receptor nuclear translocator-like 11p15 7(5/2/0) ISS
EGR1 early growth response 1 5q23-q31 1(0/1/0) IDA[1662794]
PPARD peroxisome proliferator-activated receptor delta 6p21.2 1(1/0/0) IEA
RORB RAR-related orphan receptor B 9q22 4(3/1/0) IEA
HES1 hes family bHLH transcription factor 1 3q28-q29 1(0/1/0) ISS
AHR aryl hydrocarbon receptor 7p15 1(1/0/0) IEA
NR3C2 nuclear receptor subfamily 3, group C, member 2 4q31 1(1/0/0) IEA
TCF7L1 transcription factor 7-like 1 (T-cell specific, HMG-box) 2p11.2 1(0/1/0) IBA
GLI2 GLI family zinc finger 2 2q14 1(0/1/0) IDA[15175043]
POU3F2 POU class 3 homeobox 2 6q16.2 1(1/0/0) IEA
RORA RAR-related orphan receptor A 15q21-q22 3(2/1/0) IDA[11053433]
CSRNP2 cysteine-serine-rich nuclear protein 2 12q13.11-q13.12 1(0/1/0) IEA
FOXP2 forkhead box P2 7q31 2(0/2/0) IDA[18987363]
HOXA3 homeobox A3 7p15.2 1(1/0/0) IEA
BCL2 B-cell CLL/lymphoma 2 18q21.3 2(0/2/0) IDA[12086670]
FOXN3 forkhead box N3 14q32.11 1(1/0/0) IEA
ZNF274 zinc finger protein 274 19q13.43 2(1/1/0) IDA[21170338]
TRIM24 tripartite motif containing 24 7q32-q34 1(1/0/0) IEA
MEOX2 mesenchyme homeobox 2 7p22.1-p21.3 1(1/0/0) IDA[9073066]; IMP[22206000]