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GO Report
Basic Info
| ID | GO:0043565 |
|---|---|
| Name | sequence-specific DNA binding |
| Type | molecular function |
| No. of Genes in BDgene | 29 |
| Source | Pathway by PBA |
PBA Result
| Pathway Name in Paper | Source | Reference | Data Set | Tool | Result Parameters | Result Link |
|---|---|---|---|---|---|---|
| GO: 0043565: sequence-speciWc DNA binding | PBA paper | Askland, K.,2009 | WTCCC Bayesian genotypic | Fisher's exact test | P < 0.05 from the WTCCC PBAs | |
| GO: 0043565: sequence-speciWc DNA binding | PBA paper | Askland, K.,2009 | WTCCC Frequentist genotypic | Fisher's exact test | P < 0.05 from the WTCCC PBAs |
GO related genes in BDgene (count: 29)
| Approved Symbol | Approved Name | Location | No. of Studies (Positive/Negative/Trend)  |
Evidence[PMID] |
|---|---|---|---|---|
| FOXO3 | forkhead box O3 | 6q21 | 1(1/0/0) | IDA[10102273] |
| TCF7L2 | transcription factor 7-like 2 (T-cell specific, HMG-box) | 10q25.3 | 1(1/0/0) | IDA[14661054]; IMP[16532032] |
| TSNAX | translin-associated factor X | 1q42.2 | 4(3/1/0) | IBA |
| TFAP2B | transcription factor AP-2 beta (activating enhancer binding protein 2 beta) | 6p12 | 1(0/1/0) | IDA[11505339] |
| GSC2 | goosecoid homeobox 2 | 22q11.21 | 1(0/1/0) | IEA |
| ATF4 | activating transcription factor 4 | 22q13.1 | 1(1/0/0) | IDA[22915762] |
| NR2E1 | nuclear receptor subfamily 2, group E, member 1 | 6q21 | 1(1/0/0) | IEA |
| THRA | thyroid hormone receptor, alpha | 17q21.1 | 1(1/0/0) | IEA |
| CLOCK | clock circadian regulator | 4q12 | 12(5/7/0) | ISS |
| CUX2 | cut-like homeobox 2 | 12q24.12 | 3(1/2/0) | IDA[15656993] |
| ARNTL | aryl hydrocarbon receptor nuclear translocator-like | 11p15 | 7(5/2/0) | ISS |
| EGR1 | early growth response 1 | 5q23-q31 | 1(0/1/0) | IDA[1662794] |
| PPARD | peroxisome proliferator-activated receptor delta | 6p21.2 | 1(1/0/0) | IEA |
| RORB | RAR-related orphan receptor B | 9q22 | 4(3/1/0) | IEA |
| HES1 | hes family bHLH transcription factor 1 | 3q28-q29 | 1(0/1/0) | ISS |
| AHR | aryl hydrocarbon receptor | 7p15 | 1(1/0/0) | IEA |
| NR3C2 | nuclear receptor subfamily 3, group C, member 2 | 4q31 | 1(1/0/0) | IEA |
| TCF7L1 | transcription factor 7-like 1 (T-cell specific, HMG-box) | 2p11.2 | 1(0/1/0) | IBA |
| GLI2 | GLI family zinc finger 2 | 2q14 | 1(0/1/0) | IDA[15175043] |
| POU3F2 | POU class 3 homeobox 2 | 6q16.2 | 1(1/0/0) | IEA |
| RORA | RAR-related orphan receptor A | 15q21-q22 | 3(2/1/0) | IDA[11053433] |
| CSRNP2 | cysteine-serine-rich nuclear protein 2 | 12q13.11-q13.12 | 1(0/1/0) | IEA |
| FOXP2 | forkhead box P2 | 7q31 | 2(0/2/0) | IDA[18987363] |
| HOXA3 | homeobox A3 | 7p15.2 | 1(1/0/0) | IEA |
| BCL2 | B-cell CLL/lymphoma 2 | 18q21.3 | 2(0/2/0) | IDA[12086670] |
| FOXN3 | forkhead box N3 | 14q32.11 | 1(1/0/0) | IEA |
| ZNF274 | zinc finger protein 274 | 19q13.43 | 2(1/1/0) | IDA[21170338] |
| TRIM24 | tripartite motif containing 24 | 7q32-q34 | 1(1/0/0) | IEA |
| MEOX2 | mesenchyme homeobox 2 | 7p22.1-p21.3 | 1(1/0/0) | IDA[9073066]; IMP[22206000] |