SNP Report

Basic Info
Name rs10865974 dbSNP Ensembl
Location chr3:52684264 - 52684264(1)
Variant Alleles G/T
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.445487
Functional Annotation intron_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000394830, ENST00000420148, ENST00000424867, ENST00000431678, ENST00000439181, ENST00000449505, ENST00000450271, ENST00000458294, ENST00000479230); upstream_gene_variant(ENST00000296302, ENST00000337303, ENST00000356770, ENST00000391191, ENST00000394799, ENST00000409057, ENST00000409114, ENST00000409767, ENST00000410007, ENST00000412587, ENST00000418458, ENST00000423351, ENST00000460073, ENST00000462550, ENST00000468146, ENST00000468885, ENST00000474423, ENST00000484022, ENST00000492349, ENST00000496254, ENST00000516978, ENST00000630615)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Goes, F. S.,2012 T OR = 0.84,P-value(Meta) = 0.00000218 OR = 0.84,P-value(Meta) = 0.00000218 Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 3)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SNORD19 small nucleolar RNA, C/D box 19 3p21.1 Mapped by Literature SNP
GNL3 guanine nucleotide binding protein-like 3 (nucleolar) 3p21.1 2(2/0/0)
PBRM1 polybromo 1 3p21 5(4/0/1)

SNPs in LD with rs10865974 (count: 125) View in gBrowse (chr3:52502498..52799789 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 125)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)