SNP Report

Basic Info

Name	rs12635140 dbSNP Ensembl
Location	chr3:52704149 - 52704149(1)
Variant Alleles	T/C
Ancestral Allele	C
Minor Allele	C
Minor Allele Frequence	0.449281
Functional Annotation	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000233027, ENST00000463762); intron_variant(ENST00000266014, ENST00000464705, ENST00000478968, ENST00000484163, ENST00000487642, ENST00000489119, ENST00000491606, ENST00000497436, ENST00000497953); non_coding_transcript_variant(ENST00000484163); upstream_gene_variant(ENST00000233025, ENST00000394783, ENST00000423431, ENST00000448693, ENST00000474945, ENST00000479553, ENST00000485899, ENST00000602728, ENST00000619898)
No. of Studies	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GLT8D1	glycosyltransferase 8 domain containing 1	3p21.1	1(1/0/0)
SPCS1	signal peptidase complex subunit 1 homolog (S. cerevisiae)	3p21.31	Mapped by LD-proxy
NEK4	NIMA-related kinase 4	3p21.1	1(1/0/0)

SNPs in LD with rs12635140 (count: 0) View in gBrowse (chr3:52704149..52704149 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)