SNP Report

Basic Info

Name	rs678 dbSNP Ensembl
Location	chr3:52786965 - 52786965(1)
Variant Alleles	A/T
Ancestral Allele	A
Minor Allele	T
Minor Allele Frequence	0.286941
Functional Annotation	downstream_gene_variant; missense_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant. Polyphen Annotation: probably damaging(ENST00000273283, ENST00000428133, ENST00000537050); benign(ENST00000484844) SIFT Annotation: deleterious(ENST00000484844, ENST00000273283, ENST00000428133, ENST00000537050)
Consequence to Transcript	downstream_gene_variant(ENST00000478667, ENST00000487686, ENST00000494603); missense_variant(ENST00000484844, ENST00000273283, ENST00000428133, ENST00000537050); NMD_transcript_variant(ENST00000484844); non_coding_transcript_exon_variant(ENST00000628722); non_coding_transcript_variant(ENST00000628722); upstream_gene_variant(ENST00000405128, ENST00000482836, ENST00000494705)
No. of Studies	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ITIH1	inter-alpha-trypsin inhibitor heavy chain 1	3p21.1	1(1/0/0)

SNPs in LD with rs678 (count: 0) View in gBrowse (chr3:52786965..52786965 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)