SNP Report

Basic Info

Name	rs11177 dbSNP Ensembl
Location	chr3:52687289 - 52687289(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.311901
Functional Annotation	downstream_gene_variant; missense_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant. Polyphen Annotation: benign(ENST00000394799, ENST00000418458, ENST00000474423, ENST00000479230, ENST00000492349) SIFT Annotation: tolerated(ENST00000394799, ENST00000418458, ENST00000474423, ENST00000479230, ENST00000492349)
Consequence to Transcript	downstream_gene_variant(ENST00000468885); missense_variant(ENST00000394799, ENST00000418458, ENST00000474423, ENST00000479230, ENST00000492349); NMD_transcript_variant(ENST00000492349); non_coding_transcript_exon_variant(ENST00000460073, ENST00000462550, ENST00000468146, ENST00000496254); non_coding_transcript_variant(ENST00000460073, ENST00000462550, ENST00000468146, ENST00000496254); upstream_gene_variant(ENST00000391191, ENST00000394830, ENST00000410413, ENST00000420148, ENST00000424867, ENST00000431678, ENST00000439181, ENST00000449505, ENST00000450271, ENST00000458294, ENST00000459623, ENST00000484022, ENST00000516978, ENST00000630615)
No. of Studies	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 4)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SNORD19	small nucleolar RNA, C/D box 19	3p21.1	Mapped by Literature SNP
GNL3	guanine nucleotide binding protein-like 3 (nucleolar)	3p21.1	2(2/0/0)
SNORD19B	small nucleolar RNA, C/D box 19B	3p21.1	Mapped by Literature SNP
PBRM1	polybromo 1	3p21	5(4/0/1)

SNPs in LD with rs11177 (count: 0) View in gBrowse (chr3:52687289..52687289 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)