SNP Report

Basic Info

Name	rs6617 dbSNP Ensembl
Location	chr3:52706166 - 52706166(1)
Variant Alleles	C/G
Ancestral Allele	G
Minor Allele	G
Minor Allele Frequence	0.445288
Functional Annotation	5_prime_UTR_variant; downstream_gene_variant; intron_variant; missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant. Polyphen Annotation: benign(ENST00000233025, ENST00000619898) SIFT Annotation: tolerated - low confidence(ENST00000233025, ENST00000619898)
Consequence to Transcript	5_prime_UTR_variant(ENST00000602728); downstream_gene_variant(ENST00000233027); intron_variant(ENST00000423431); missense_variant(ENST00000233025, ENST00000619898); non_coding_transcript_exon_variant(ENST00000448693, ENST00000474945); non_coding_transcript_variant(ENST00000448693, ENST00000474945); upstream_gene_variant(ENST00000266014, ENST00000394783, ENST00000463762, ENST00000464705, ENST00000478968, ENST00000484163, ENST00000487642, ENST00000489119, ENST00000491606, ENST00000497436, ENST00000497953)
No. of Studies	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GLT8D1	glycosyltransferase 8 domain containing 1	3p21.1	1(1/0/0)
SPCS1	signal peptidase complex subunit 1 homolog (S. cerevisiae)	3p21.31	Mapped by LD-proxy
NEK4	NIMA-related kinase 4	3p21.1	1(1/0/0)

SNPs in LD with rs6617 (count: 0) View in gBrowse (chr3:52706166..52706166 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)