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Enriched Pathway by Core Genes
The pathway enrichment analysis for core genes was done by DAVID. The core genes for pathway enrichment analysis included both training genes and prioritized genes from gene prioritization analysis. Gene List
Filter Enriched Pathway
Enriched Pathways (count: 51)
Category
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ID
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Name
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Mapped Gene Count
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Total Gene Count
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P-value
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Benjamini
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FDR
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Genes
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PBA Result?
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---|---|---|---|---|---|---|---|---|---|---|
1 | GOTERM_BP_FAT | GO:0007399 | nervous system development | 22 | 2224 | 1.27E-8 | 3.42E-7 | 2.26E-5 |
22 genes
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YES |
2 | GOTERM_MF_FAT | GO:0004871 | signal transducer activity | 24 | 1762 | 4.82E-12 | 2.37E-10 | 6.57E-9 |
24 genes
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YES |
3 | GOTERM_MF_FAT | GO:0004872 | receptor activity | 24 | 1680 | 1.77E-12 | 1.53E-10 | 2.42E-9 |
24 genes
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YES |
4 | GOTERM_CC_FAT | GO:0005887 | integral component of plasma membrane | 23 | 1637 | 6.82E-11 | 1.19E-9 | 8.83E-8 |
23 genes
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YES |
5 | GOTERM_BP_FAT | GO:0006811 | ion transport | 22 | 1475 | 5.96E-12 | 4.26E-10 | 1.05E-8 |
22 genes
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YES |
6 | GOTERM_MF_FAT | GO:0005102 | receptor binding | 12 | 1464 | 0.001172682 | 0.0095921 | 1.588607405 |
12 genes
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YES |
7 | GOTERM_BP_FAT | GO:0006812 | cation transport | 17 | 988 | 8.08E-10 | 3.2E-8 | 1.43E-6 |
17 genes
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YES |
8 | GOTERM_BP_FAT | GO:0007417 | central nervous system development | 14 | 942 | 3.08E-7 | 5.28E-6 | 5.45E-4 |
14 genes
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YES |
9 | GOTERM_BP_FAT | GO:0031175 | neuron projection development | 11 | 851 | 3.81E-5 | 3.2E-4 | 0.06742713 |
11 genes
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YES |
10 | GOTERM_BP_FAT | GO:0030001 | metal ion transport | 17 | 828 | 5.98E-11 | 3.2E-9 | 1.06E-7 |
17 genes
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YES |
11 | GOTERM_CC_FAT | GO:0045202 | synapse | 28 | 768 | 1.01E-24 | 2.47E-22 | 1.31E-21 |
28 genes
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YES |
12 | GOTERM_BP_FAT | GO:0000904 | cell morphogenesis involved in differentiation | 10 | 763 | 9.7E-5 | 7.32E-4 | 0.171499021 |
10 genes
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YES |
13 | GOTERM_BP_FAT | GO:0007420 | brain development | 12 | 717 | 1.1E-6 | 1.55E-5 | 0.001950693 |
12 genes
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YES |
14 | GOTERM_MF_FAT | GO:0004672 | protein kinase activity | 6 | 653 | 0.028488647 | 0.136392409 | 32.59462048 |
6 genes
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YES |
15 | GOTERM_BP_FAT | GO:0006954 | inflammatory response | 7 | 648 | 0.005395144 | 0.02577694 | 9.130517593 |
7 genes
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YES |
16 | GOTERM_BP_FAT | GO:0007268 | chemical synaptic transmission | 26 | 620 | 1.6E-25 | 4.13E-22 | 2.84E-22 |
26 genes
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YES |
17 | GOTERM_MF_FAT | GO:0008324 | cation transmembrane transporter activity | 8 | 614 | 0.001055867 | 0.008850036 | 1.431415794 |
8 genes
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YES |
18 | GOTERM_BP_FAT | GO:0015672 | monovalent inorganic cation transport | 8 | 490 | 2.02E-4 | 0.001405267 | 0.357266676 |
8 genes
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YES |
19 | GOTERM_MF_FAT | GO:0022838 | substrate-specific channel activity | 9 | 442 | 1.77E-5 | 2.26E-4 | 0.024186209 |
9 genes
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YES |
20 | GOTERM_MF_FAT | GO:0005216 | ion channel activity | 9 | 426 | 1.36E-5 | 2.04E-4 | 0.018528758 |
9 genes
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YES |
21 | GOTERM_MF_FAT | GO:0046873 | metal ion transmembrane transporter activity | 6 | 421 | 0.004931426 | 0.033535793 | 6.524262892 |
6 genes
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YES |
22 | GOTERM_BP_FAT | GO:0006816 | calcium ion transport | 13 | 379 | 9.72E-11 | 4.9E-9 | 1.72E-7 |
13 genes
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YES |
23 | GOTERM_MF_FAT | GO:0022836 | gated channel activity | 9 | 332 | 2.17E-6 | 3.95E-5 | 0.002966117 |
9 genes
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YES |
24 | GOTERM_CC_FAT | GO:0043235 | receptor complex | 13 | 329 | 9.12E-11 | 1.48E-9 | 1.18E-7 |
13 genes
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YES |
25 | GOTERM_BP_FAT | GO:0006869 | lipid transport | 4 | 317 | 0.045481159 | 0.156033678 | 56.12567291 |
4 genes
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YES |
26 | GOTERM_MF_FAT | GO:0005085 | guanyl-nucleotide exchange factor activity | 8 | 307 | 1.45E-5 | 2.0E-4 | 0.019796314 |
8 genes
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YES |
27 | GOTERM_MF_FAT | GO:0005261 | cation channel activity | 6 | 303 | 0.001186512 | 0.009480121 | 1.607202135 |
6 genes
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YES |
28 | KEGG_PATHWAY | hsa04010 | MAPK signaling pathway | 5 | 255 | 0.050086706 | 0.231326508 | 44.93996299 |
5 genes
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YES |
29 | GOTERM_BP_FAT | GO:0006813 | potassium ion transport | 5 | 221 | 0.002276923 | 0.012144819 | 3.954168213 |
5 genes
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YES |
30 | GOTERM_CC_FAT | GO:0045211 | postsynaptic membrane | 14 | 211 | 1.59E-14 | 3.87E-13 | 2.06E-11 |
14 genes
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YES |
31 | GOTERM_BP_FAT | GO:0007565 | female pregnancy | 5 | 205 | 0.001731742 | 0.009463748 | 3.021053466 |
5 genes
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YES |
32 | GOTERM_MF_FAT | GO:0005244 | voltage-gated ion channel activity | 3 | 191 | 0.091350032 | 0.319069633 | 72.94693154 |
3 genes
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YES |
33 | GOTERM_MF_FAT | GO:0022832 | voltage-gated channel activity | 3 | 191 | 0.091350032 | 0.319069633 | 72.94693154 |
3 genes
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YES |
34 | GOTERM_MF_FAT | GO:0005516 | calmodulin binding | 5 | 189 | 0.001550106 | 0.012089995 | 2.094899472 |
5 genes
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YES |
35 | KEGG_PATHWAY | hsa04020 | Calcium signaling pathway | 13 | 179 | 9.51E-11 | 3.04E-9 | 1.1E-7 |
13 genes
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YES |
36 | GOTERM_BP_FAT | GO:0007586 | digestion | 3 | 167 | 0.066316913 | 0.210997744 | 70.31292206 |
3 genes
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YES |
37 | GOTERM_MF_FAT | GO:0016247 | channel regulator activity | 5 | 135 | 4.42E-4 | 0.004002625 | 0.601070764 |
5 genes
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YES |
38 | GOTERM_MF_FAT | GO:0022843 | voltage-gated cation channel activity | 3 | 135 | 0.049917455 | 0.209863435 | 50.28388405 |
3 genes
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YES |
39 | GOTERM_MF_FAT | GO:0015085 | calcium ion transmembrane transporter activity | 4 | 128 | 0.004723773 | 0.032788435 | 6.257693419 |
4 genes
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YES |
40 | KEGG_PATHWAY | hsa04722 | Neurotrophin signaling pathway | 4 | 120 | 0.027715802 | 0.15086102 | 27.8496063 |
4 genes
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YES |
41 | GOTERM_MF_FAT | GO:0005262 | calcium channel activity | 4 | 113 | 0.003330148 | 0.024188161 | 4.450346946 |
4 genes
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YES |
42 | KEGG_PATHWAY | hsa04540 | Gap junction | 5 | 88 | 0.001302753 | 0.011062431 | 1.502514733 |
5 genes
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YES |
43 | KEGG_PATHWAY | hsa04720 | Long-term potentiation | 6 | 66 | 2.68E-5 | 3.43E-4 | 0.031146966 |
6 genes
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YES |
44 | GOTERM_MF_FAT | GO:0004714 | transmembrane receptor protein tyrosine kinase activity | 3 | 65 | 0.01289272 | 0.069662851 | 16.23022239 |
3 genes
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YES |
45 | KEGG_PATHWAY | hsa05214 | Glioma | 3 | 65 | 0.049309583 | 0.236383531 | 44.41456888 |
3 genes
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YES |
46 | GOTERM_BP_FAT | GO:0007194 | negative regulation of adenylate cyclase activity | 5 | 24 | 3.58E-7 | 5.98E-6 | 6.34E-4 |
5 genes
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YES |
47 | GOTERM_MF_FAT | GO:0005234 | extracellular-glutamate-gated ion channel activity | 4 | 20 | 1.92E-5 | 2.37E-4 | 0.026256726 |
4 genes
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YES |
48 | GOTERM_MF_FAT | GO:0004970 | ionotropic glutamate receptor activity | 4 | 19 | 1.64E-5 | 2.17E-4 | 0.022359883 |
4 genes
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YES |
49 | GOTERM_MF_FAT | GO:0004935 | adrenergic receptor activity | 3 | 16 | 8.07E-4 | 0.006943128 | 1.096403612 |
3 genes
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YES |
50 | GOTERM_MF_FAT | GO:0004716 | receptor signaling protein tyrosine kinase activity | 2 | 10 | 0.026265383 | 0.128077738 | 30.45869048 |
2 genes
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YES |
51 | GOTERM_MF_FAT | GO:0004952 | dopamine neurotransmitter receptor activity | 4 | 7 | 6.05E-7 | 1.49E-5 | 8.26E-4 |
4 genes
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YES |