rs_ID |
Literature-origin SNPs with LD |
Functional Annotation |
r2[population] |
rs2072390
|
|
intron_variant; NMD_transcript_variant; upstream_gene_variant |
0.8[TSI]; 0.83[CHB]; 0.857[JPT]
|
rs2577831
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant |
0.83[CHB]; 0.867[JPT]
|
rs2159644
|
|
downstream_gene_variant; intron_variant |
0.825[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs9324
|
|
downstream_gene_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant; upstream_gene_variant |
0.811[CEU]; 0.827[TSI]; 0.859[CHB]; 0.923[CHD]; 0.906[JPT]
|
rs12488461
|
|
downstream_gene_variant; intron_variant; NMD_transcript_variant |
0.857[JPT]
|
rs2276824
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant |
0.83[CHB]; 0.867[JPT]
|
rs2590838
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant |
0.83[CHB]; 0.867[JPT]
|
rs2240920
|
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
0.904[CEU]; 0.91[CHB]; 0.949[CHD]; 0.953[JPT]
|
rs2300149
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant |
0.859[CEU]; 0.955[TSI]; 0.862[CHB]; 0.923[CHD]; 0.906[JPT]
|
rs2118540
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant |
0.805[JPT]
|
rs678
|
|
downstream_gene_variant; missense_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant |
0.951[CEU]; 0.91[CHB]; 0.953[JPT]
|
rs34017441
|
|
3_prime_UTR_variant; downstream_gene_variant; upstream_gene_variant |
0.866[TSI]; 0.83[CHB]; 0.906[JPT]
|
rs1076425
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant |
0.811[CEU]; 0.829[TSI]; 0.862[CHB]; 0.923[CHD]; 0.906[JPT]
|
rs10865973
|
|
intron_variant; upstream_gene_variant |
0.83[CHB]; 0.86[JPT]
|
rs4687551
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant |
0.811[CEU]; 0.805[TSI]; 0.862[CHB]; 0.923[CHD]; 0.86[JPT]
|
rs13085895
|
|
intron_variant; NMD_transcript_variant |
0.83[CHB]; 0.86[JPT]
|
rs3733039
|
|
intron_variant; upstream_gene_variant |
0.825[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs2019065
|
|
upstream_gene_variant |
0.977[TSI]; 1.0[CHB]; 0.974[CHD]; 0.953[JPT]
|
rs2083180
|
|
intron_variant; NMD_transcript_variant |
0.83[CHB]; 0.86[JPT]
|
rs1866268
|
|
intron_variant; upstream_gene_variant |
0.825[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs6778329
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant |
0.903[CHB]; 0.949[JPT]
|
rs13079063
|
|
3_prime_UTR_variant; downstream_gene_variant; upstream_gene_variant |
0.819[TSI]; 0.821[CHB]; 0.903[JPT]
|
rs3852066
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant |
0.825[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs7624716
|
|
intron_variant |
0.825[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs2079929
|
|
intron_variant; upstream_gene_variant |
0.825[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs10510760
|
|
intron_variant; NMD_transcript_variant; upstream_gene_variant |
0.83[CHB]; 0.86[JPT]
|
rs2164885
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant |
0.823[TSI]; 0.822[CHB]; 0.903[JPT]
|
rs2239549
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant |
0.859[CEU]; 0.955[TSI]; 0.819[CHB]; 0.923[CHD]; 0.906[JPT]
|
rs2268027
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant |
0.813[CHB]; 0.85[JPT]
|
rs1014969
|
|
upstream_gene_variant |
0.83[CHB]; 0.86[JPT]
|
rs6804145
|
|
downstream_gene_variant; intron_variant; NMD_transcript_variant |
0.823[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs2286798
|
|
downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant |
0.951[CEU]; 0.977[TSI]; 0.91[CHB]; 0.949[CHD]; 0.953[JPT]
|
rs2240919
|
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
0.91[CHB]; 0.903[JPT]
|
rs2270197
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant |
0.862[CHB]; 0.906[JPT]
|
rs13082208
|
|
intron_variant; NMD_transcript_variant; upstream_gene_variant |
0.856[CHB]; 0.891[JPT]
|
rs11716747
|
|
downstream_gene_variant; intron_variant |
0.822[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs2239551
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant |
0.816[CEU]; 0.955[TSI]; 0.859[CHB]; 0.923[CHD]; 0.906[JPT]
|
rs3774355
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant |
0.902[CEU]; 0.862[CHB]; 0.86[JPT]
|
rs767418
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant |
0.823[TSI]; 0.83[CHB]; 0.854[JPT]
|
rs4687638
|
|
intron_variant; NMD_transcript_variant; upstream_gene_variant |
0.844[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs13083798
|
|
intron_variant; NMD_transcript_variant; upstream_gene_variant |
0.826[CHB]; 0.907[JPT]
|
rs6445535
|
|
downstream_gene_variant; intron_variant |
0.825[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs2268025
|
|
intron_variant |
0.866[CHB]; 0.86[JPT]
|
rs8906
|
|
5_prime_UTR_variant; downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant |
0.844[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs13082960
|
|
intron_variant; NMD_transcript_variant; upstream_gene_variant |
0.857[JPT]
|
rs2230535
|
|
downstream_gene_variant; synonymous_variant |
0.866[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs1108842
|
|
5_prime_UTR_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant |
0.83[CHB]; 0.867[JPT]
|
rs3755799
|
|
upstream_gene_variant |
0.83[CHD]
|
rs11717836
|
|
upstream_gene_variant |
0.813[CHB]; 0.847[JPT]
|
rs1075653
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_variant; splice_region_variant; upstream_gene_variant |
0.811[CEU]; 0.827[TSI]; 0.862[CHB]; 0.923[CHD]; 0.906[JPT]
|
rs6617
|
|
5_prime_UTR_variant; downstream_gene_variant; intron_variant; missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant |
0.83[CHB]; 0.86[JPT]
|
rs11130310
|
|
intron_variant; NMD_transcript_variant |
0.825[TSI]; 0.83[CHB]; 0.813[JPT]
|
rs7622694
|
|
intron_variant; NMD_transcript_variant |
0.825[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs2071044
|
|
downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant |
0.866[CHB]
|
rs3755798
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant |
0.825[TSI]; 0.86[JPT]
|
rs3774354
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant |
0.904[CEU]; 0.977[TSI]; 0.862[CHB]; 0.897[CHD]; 0.906[JPT]
|
rs4687550
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant |
0.811[CEU]; 0.862[CHB]; 0.906[JPT]
|
rs2028216
|
|
downstream_gene_variant; intron_variant; NMD_transcript_variant |
0.844[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs2164884
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant |
0.861[TSI]; 0.823[CHB]; 0.901[JPT]
|
rs6976
|
|
3_prime_UTR_variant; downstream_gene_variant; NMD_transcript_variant |
0.844[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs2535627
|
|
downstream_gene_variant |
0.826[CHB]
|
rs1029871
|
|
downstream_gene_variant; missense_variant |
0.83[CHB]; 0.86[JPT]
|
rs13071584
|
|
intron_variant; NMD_transcript_variant |
0.825[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs35526119
|
|
downstream_gene_variant; intron_variant |
0.825[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs12497998
|
|
downstream_gene_variant; intron_variant |
0.825[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs11714419
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant |
0.844[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs9881468
|
|
downstream_gene_variant; upstream_gene_variant |
0.811[CEU]; 0.862[CHB]; 0.899[CHD]; 0.906[JPT]
|
rs2268023
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant |
0.862[CHB]; 0.906[JPT]
|
rs11130323
|
|
downstream_gene_variant; intron_variant |
0.83[CHB]; 0.86[JPT]
|
rs4687548
|
|
intron_variant; NMD_transcript_variant |
0.83[CHB]; 0.86[JPT]
|
rs9879090
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant |
0.822[CHB]; 0.867[JPT]
|
rs3774365
|
|
downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant |
0.83[CHB]; 0.86[JPT]
|
rs998909
|
|
upstream_gene_variant |
0.823[CHB]; 0.899[JPT]
|
rs12635140
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant |
0.825[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs2710323
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant |
0.954[CHB]; 0.903[CHD]; 0.909[JPT]
|
rs6445534
|
|
3_prime_UTR_variant; downstream_gene_variant; upstream_gene_variant |
0.83[CHB]; 0.818[JPT]
|
rs2239699
|
|
downstream_gene_variant; upstream_gene_variant |
0.904[CEU]; 0.893[CHB]; 0.888[JPT]
|
rs3774366
|
|
downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant |
0.825[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs2071508
|
|
downstream_gene_variant; upstream_gene_variant |
0.808[CEU]; 0.829[TSI]; 0.856[CHB]; 0.923[CHD]; 0.906[JPT]
|
rs2071506
|
|
downstream_gene_variant; upstream_gene_variant |
0.811[CEU]; 0.829[TSI]; 0.817[CHB]; 0.923[CHD]; 0.906[JPT]
|
rs3617
|
|
downstream_gene_variant; missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant |
0.911[CHB]; 0.816[JPT]
|
rs11130312
|
|
intron_variant; NMD_transcript_variant |
0.83[CHB]; 0.86[JPT]
|
rs2336146
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant |
0.825[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs11177
|
|
downstream_gene_variant; missense_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant |
0.844[TSI]; 0.83[CHB]; 0.814[JPT]
|
rs6762813
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant |
0.844[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs4481150
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant |
0.807[CHB]; 0.812[JPT]
|
rs2336545
|
|
intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant |
0.866[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs2071507
|
|
downstream_gene_variant; upstream_gene_variant |
0.811[CEU]; 0.91[CHB]; 0.953[JPT]
|
rs3733045
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant |
0.825[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs3733041
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant |
0.825[TSI]; 0.83[CHB]; 0.86[JPT]
|
rs10780035
|
|
intron_variant; upstream_gene_variant |
0.844[TSI]; 0.83[CHB]; 0.86[JPT]
|