Study Report
Basic Info
Reference |
Curtis, D.,2011 PMID: 21057379
|
Citation |
Curtis, D., A. E. Vine, et al. (2011). "Case-case genome-wide association analysis shows markers differentially associated with schizophrenia and bipolar disorder and implicates calcium channel genes." Psychiatr Genet 21(1): 1-4.
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Disease Type |
Bipolar I Disorder & Schizophrenia |
Study Design |
case-case |
Study Type |
Genome-wide association study |
Sample Size |
506 patients with bipolar 1 disorder, 523 patients with schizophrenia and 505 controls. |
SNP/Region/Marker Size |
302,482 SNPs |
Predominant Ethnicity |
Caucasian |
Population |
British |
Detail Info
Sample Diagnosis |
RDC |
Sample Status |
The research has received UK NHS Multicentre Research Ethics Committee (MREC) approval from the London Metropolitan MREC.Subjects were recruited on the basis of having European, non-Jewish ancestry and at least three grand-parents who were from the UK with the fourth possibly coming from a different European country as defined before the 2004 enlargement. All subjects were interviewed using the lifetime version of the Schizophrenia and Affective Disorders Schedule and assigned a Research Diagnostic Criteria diagnosis. |
Technique |
genotyping(Affymetrix 500K array) |
Statistical Method |
For these markers, allele frequencies were compared between bipolar disorder and schizophrenia using a two-by-two chi-squared test. |
Result Summary |
RESULTS: Eight markers were significant at P value of less than 10(-5). Of these, the most interesting finding was for rs17645023, which was significant at P value of less than 10(-6) and which lies 36 kb from CACNG5. Control allele frequencies for this marker were intermediate between those for bipolar and schizophrenic cases. CONCLUSION: The application of this approach suggests that it does have some merits. The finding for CACNG5, taken together with the earlier implication of CACNA1C and CACNA1B, strongly suggests a key role for voltage-dependent calcium channel genes in the susceptibility to bipolar disorder and/or schizophrenia. |
Genetic factors reported by this study for BD
SNPs reported by this study for BD (count: 8)
SNP |
Related Gene(s) |
Allele Change |
Risk Allele |
Statistical Values |
Author Comments |
Result Category |
rs17075286 |
POMGNT2
|
|
|
chi suqare test: SZ v.BP, P-value = E-6.1; BP v.C, P-value = 0.89
|
Suggestive association was found.
Suggestive association was found.
|
Trend
|
rs17645023 |
CACNG5
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|
|
chi suqare test: SZ v.BP, P-value = E-6.2; BP v.C, P-value = 0.02
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Suggestive association was found.
Suggestive association was found.
|
Trend
|
rs1795648 |
ERC2
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|
|
chi suqare test: SZ v.BP, P-value = E-5.2; BP v.C, P-value = 0.01
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Suggestive association was found.
Suggestive association was found.
|
Trend
|
rs6459804 |
PTPRN2
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|
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chi suqare test: SZ v.BP, P-value = E-5.1; BP v.C, P-value = 6.3E-03
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Suggestive association was found.
Suggestive association was found.
|
Trend
|
rs6459806 |
PTPRN2
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|
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chi suqare test: SZ v.BP, P-value = E-5.1; BP v.C, P-value = 6.3E-03
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Suggestive association was found.
Suggestive association was found.
|
Trend
|
rs7065696 |
PHF8
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|
|
chi suqare test: SZ v.BP, P-value = E-6.4; BP v.C, P-value = 0.4
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Suggestive association was found.
Suggestive association was found.
|
Trend
|
rs11210359 |
LRRIQ3
|
|
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chi suqare test: SZ v.BP, P-value = E-5.1; BP v.C, P-value = 6.3E-03
|
Suggestive association was found.
Suggestive association was found.
|
Trend
|
rs1203847 |
RNF4
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|
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chi suqare test: SZ v.BP, P-value = E-05; BP v.C, P-value = 0.4
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Suggestive association was found.
Suggestive association was found.
|
Trend
|
Genes reported by this study for BD (count: 7)
Gene |
Statistical Values/Author Comments |
Result Category |
LRRIQ3 |
There is a trend of this gene for significant association.
There is a trend of this gene for significant association.
|
Trend
|
RNF4 |
There is a trend of this gene for significant association.
There is a trend of this gene for significant association.
|
Trend
|
ERC2 |
There is a trend of this gene for significant association.
There is a trend of this gene for significant association.
|
Trend
|
PHF8 |
There is a trend of this gene for significant association.
There is a trend of this gene for significant association.
|
Trend
|
CACNG5 |
The application of this approach suggests that it does have some merits. The finding for CACNG5, tak......
The application of this approach suggests that it does have some merits. The finding for CACNG5, taken together with the earlier implication of CACNA1C and CACNA1B, strongly suggests a key role for voltage-dependent calcium channel genes in the susceptibility to bipolar disorder and/or schizophrenia.
More...
|
Positive
|
POMGNT2 |
There is a trend of this gene for significant association.
There is a trend of this gene for significant association.
|
Trend
|
PTPRN2 |
There is a trend of this gene for significant association.
There is a trend of this gene for significant association.
|
Trend
|
Genetic factors reported by this study for SZ and/or MDD
SNPs reported by this study for SZ/MDD
Disease |
SNP |
Related Gene(s) |
Statistical Values |
Description |
Result Category |
SZ |
rs7065696 |
PHF8
|
chi suqare test:SZ v.BP, P-value = E-6.4;SZ v.C, P-value = E-4.6 |
Suggestive association was found. |
Trend |
SZ |
rs1203847 |
RNF4
|
chi suqare test:SZ v.BP, P-value = E-5;SZ v.C, P-value = E-6.9 |
Suggestive association was found. |
Trend |
SZ |
rs17075286 |
POMGNT2
|
chi suqare test:SZ v.BP, P-value = E-6.1;SZ v.C, P-value = E-5.9 |
Suggestive association was found. |
Trend |
SZ |
rs11210359 |
LRRIQ3
|
chi suqare test:SZ v.BP, P-value = E-5.1;SZ v.C, P-value = E-1 |
Suggestive association was found. |
Trend |
SZ |
rs6459804 |
PTPRN2
|
chi suqare test:SZ v.BP, P-value = E-5.1;SZ v.C, P-value = E-1.1 |
Suggestive association was found. |
Trend |
SZ |
rs6459806 |
PTPRN2
|
chi suqare test:SZ v.BP, P-value = E-5.1;SZ v.C, P-value = E-1 |
Suggestive association was found. |
Trend |
SZ |
rs17645023 |
CACNG5
|
chi suqare test:SZ v.BP, P-value = E-6.2;SZ v.C, P-value = E-2.1 |
Suggestive association was found. |
Trend |
SZ |
rs1795648 |
ERC2
|
chi suqare test:SZ v.BP, P-value = E-5.2;SZ v.C, P-value = E-1.3 |
Suggestive association was found. |
Trend |
Genes reported by this study for SZ/MDD
Disease |
Gene |
Description |
Result Category |
SZ |
LRRIQ3 |
There is a trend of this gene for significant association. |
Trend |
SZ |
PHF8 |
There is a trend of this gene for significant association. |
Trend |
SZ |
POMGNT2 |
There is a trend of this gene for significant association. |
Trend |
SZ |
PTPRN2 |
There is a trend of this gene for significant association. |
Trend |
SZ |
ERC2 |
There is a trend of this gene for significant association. |
Trend |
SZ |
RNF4 |
There is a trend of this gene for significant association. |
Trend |
SZ |
CACNG5 |
The application of this approach suggests that it does have some merits. The finding for CACNG5, taken together with the earlier implication of CACNA1C and CACNA1B, strongly suggests a key role for voltage-dependent calcium channel genes in the susceptibility to bipolar disorder and/or schizophrenia. |
Positive |