BDgene

SNP Report

Basic Info
Name rs6459804 dbSNP Ensembl
Location chrCHR_HSCHR7_2_CTG7:157717503 - 157717503(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.428115
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000389413, ENST00000389416, ENST00000389418, ENST00000409483)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Curtis, D.,2011 chi suqare test: SZ v.BP, P-value = E-5.1; BP v.C, P-value =...... chi suqare test: SZ v.BP, P-value = E-5.1; BP v.C, P-value = 6.3E-03 More... Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 7q36 1(0/0/1)

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Curtis, D.,2011 chi suqare test:SZ v.BP, P-value = E-5.1;SZ v.C, P-value = E-1.1 Suggestive association was found. Trend

Overlap with MDD from cross-disorder studies (count: 0)