BDgene

SNP Report

Basic Info
Name rs7065696 dbSNP Ensembl
Location chrX:53947621 - 53947621(1)
Variant Alleles C/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.126887
Functional Annotation intron_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000322659, ENST00000338154, ENST00000338946, ENST00000357988, ENST00000396282, ENST00000443302); upstream_gene_variant(ENST00000470103)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Curtis, D.,2011 chi suqare test: SZ v.BP, P-value = E-6.4; BP v.C, P-value =...... chi suqare test: SZ v.BP, P-value = E-6.4; BP v.C, P-value = 0.4 More... Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PHF8 PHD finger protein 8 Xp11.22 1(0/0/1)

SNPs in LD with rs7065696 (count: 9) View in gBrowse (chrX:53918495..54109935 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 9)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Curtis, D.,2011 chi suqare test:SZ v.BP, P-value = E-6.4;SZ v.C, P-value = E-4.6 Suggestive association was found. Trend

Overlap with MDD from cross-disorder studies (count: 0)