BDgene

SNP Report

Basic Info
Name rs17645023 dbSNP Ensembl
Location chr17:66920916 - 66920916(1)
Variant Alleles A/T
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.254593
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Curtis, D.,2011 chi suqare test: SZ v.BP, P-value = E-6.2; BP v.C, P-value =...... chi suqare test: SZ v.BP, P-value = E-6.2; BP v.C, P-value = 0.02 More... Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CACNG5 calcium channel, voltage-dependent, gamma subunit 5 17q24 2(1/1/0)

SNPs in LD with rs17645023 (count: 0) View in gBrowse (chr17:66920916..66920916 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Curtis, D.,2011 chi suqare test:SZ v.BP, P-value = E-6.2;SZ v.C, P-value = E-2.1 Suggestive association was found. Trend

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016