BDgene

Core Gene from Gene Prioritization Pathways from PBA (Pathway-based Analysis) Enriched Pathways for Core Genes Enriched Pathways for Cross-disorder Genes

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Region Report

Basic Info

Region Name	5q33
Chromosome Position	chr5:150400000-160500000
No. of Studies (Positive/Negative/Trend)	2(0/1/1)

Region related studies (count: 2)

Reference	Markers	Statistical Values	Author Comments	Result Category
Jasinska, A. J.,2009	rs6863955, rs253602, rs7713029, rs10036026, rs9313827, rs2176297	Two-Point Parametric LOD score: For marker rs6863955, 0.4 fo...... Two-Point Parametric LOD score: For marker rs6863955, 0.4 for CVCR sample, 3.28 for CO sample, 1.78 for combined sample; For marker rs253602, 3.37 for CVCR sample, 0.57 for CO sample, 2.99 for combined sample; For marker rs7713029, 1.72 for CVCR sample, 1.72 for CO sample, 3.27 for combined sample; For marker rs10036026, 0.17 for CVCR sample, 3.29 for CO sample, 2.37 for combined sample; For marker rs9313827, 0.17 for CVCR sample, 3.29 for CO sample, 2.38 for combined sample; For marker rs2176297, 1.18 for CVCR sample, 2.19 for CO sample, 3.33 for combined sample More...	Suggestive linkage was found in this region. Suggestive linkage was found in this region.	Trend
Cheng, R.,2006	D5S820	Two point parametric linkage analysis: LOD = 1.68, theta = 0...... Two point parametric linkage analysis: LOD = 1.68, theta = 0, Model BP3, dom More...	No significant linkage was found in this region. No significant linkage was found in this region.	Negative

Region related genes (count: 10)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SLU7	SLU7 splicing factor homolog (S. cerevisiae)	5q33.3	1(0/0/1)
NMUR2	neuromedin U receptor 2	5q33.1	1(0/1/0)
GLRA1	glycine receptor, alpha 1	5q33.1	1(1/0/0)
GRIA1	glutamate receptor, ionotropic, AMPA 1	5q33	2(2/0/0)
EBF1	early B-cell factor 1	5q34	1(1/0/0)
CCDC69	coiled-coil domain containing 69	5q33.1	1(1/0/0)
ADRA1B	adrenoceptor alpha 1B	5q33.3	1(1/0/0)
GPX3	glutathione peroxidase 3	5q33.1	1(1/0/0)
LSM11	LSM11, U7 small nuclear RNA associated	5q33.3	1(1/0/0)
ITK	IL2-inducible T-cell kinase	5q31-q32	1(1/0/0)

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Region: chr5:150400000..160500000 View in gBrowse