BDgene

SNP Report

Basic Info
Name rs6927023 dbSNP Ensembl
Location chr6:28486444 - 28486444(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.0688898
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Saito T., 2014 A/G First-set screening: P-valuecorrected=0.056, P-va...... First-set screening: P-valuecorrected=0.056, P-value=0.00132, OR=1.52, 95%CI=1.18-1.96 More... Significant association was observed. Significant association was observed. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GPX6 glutathione peroxidase 6 6p22.1 1(1/0/0)

SNPs in LD with rs6927023 (count: 66) View in gBrowse (chr6:28302523..28686315 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 66)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Saito T., 2014 First-set screening: P-valuecorrected=0.16, P-value=0.00384, OR=1.46, 95%CI=1.13-1.88 Significant association was observed. Positive

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016