BDgene

KEGG Pathway Report

Basic Info
ID hsa01030
Name Glycan structures - biosynthesis 1
No. of Genes in BDgene  8
Source Pathway by PBA

PBA Result
Pathway Name in Paper Source Reference Data Set Tool Result Parameters Result Link
Glycan structures biosynthesis 1 PBA paper O'Dushlaine, C.,2011 WTCCC SNP ratio test P-value=0.001
Glycan structures biosynthesis 1 PBA paper Peng, G., 2010 WTCCC hypergeometric test (Fisher's exact test), Sidak's method, Simes' method, Simes/FDR method Fisher exact test P-value=0.000266725; Simes/FDR P-value<1E-20

Pathway related genes in BDgene (count: 8)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
HS6ST2 heparan sulfate 6-O-sulfotransferase 2 Xq26.2 1(0/0/1)
NDST3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 4q26 1(1/0/0)
MGAT4A mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A 2q12 1(0/0/1)
EXTL1 exostosin-like glycosyltransferase 1 1p36.1 1(1/0/0)
ALG9 ALG9, alpha-1,2-mannosyltransferase 11q23 1(0/1/0)
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 8q24.22 4(3/0/1)
GALNT13 polypeptide N-acetylgalactosaminyltransferase 13 2q24.1 1(0/1/0)
ALG10B ALG10B, alpha-1,2-glucosyltransferase 12q12 1(0/1/0)