Gene Report

Basic Info
Approved Symbol NPHP4
Symbol Alias SLSN4, KIAA0673, POC10
Approved Name nephronophthisis 4
Name Alias nephroretinin, "nephrocystin-4", "POC10 centriolar protein homolog (Chlamydomonas)"
Location 1p36
Position chr1:5862811-5992473, -1
External Links HGNC: 19104
Entrez Gene: 261734
Ensembl: ENSG00000131697
UCSC: uc001alq.2
No. of Studies 1 (Positive: 1; Negative: 0; trend: 0)
Overlap with SZ? NO
Overlap with MDD? NO
Gene related studies (count: 1)
Reference Tested Markers Statistical Values/Author Comments Result Category Comment on Study
Hattori, E.,2009 SNP: rs806104 After the two-stage analysis, markers in this gene remained nominally significant (allelic P<0.05) with the same allele being consistently over-represented in both the first and the follow-up stages. Positive Comment on Study
Gene functional annotation
Gene related GO terms (count: 22)

GO terms by PBA (count: 2)

GO terms by database search (count: 20)

Gene related KEGG pathways (count: 0)

Gene related BioCarta pathways (count: 0)

Gene related interactors from protein-protein interactions data in HPRD (count: 2)

Related other genetic factors
Gene related SNPs (count: 28)

Literature-origin SNPs (count: 1)

LD-proxies (count: 27)

Gene related CNVs (count: 0)

Gene related other variants (count: 0)

Gene related regions (count: 5)

Overlap with schizophrenia (SZ) and major depressive disorder (MDD)
Gene relationship with SZ

Gene relationship with MDD

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Region: chr1:5862811..5992473 View in gBrowse
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