BDgene

SNP Report

Basic Info
Name rs806104 dbSNP Ensembl
Location chr1:5982874 - 5982874(1)
Variant Alleles G/A/C
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.371605
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000378156, ENST00000378169, ENST00000478423, ENST00000489180, ENST00000622020); NMD_transcript_variant(ENST00000378169, ENST00000489180); non_coding_transcript_variant(ENST00000478423)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Hattori, E.,2009 In GWAS: Allelic P-value = 0.00085, Genotypic P-value = 0.00...... In GWAS: Allelic P-value = 0.00085, Genotypic P-value = 0.00165, Recessive P-value = 0.00071, HWE P-value = 0.84816; in Follow-up study: MAF=0.23, Allelic P-value = 0.00368, Allelic Q-value=0.49274, HWE P-value = 0.37663 More... Significant association was observed in both GWAS and Follow...... Significant association was observed in both GWAS and Follow-up study. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NPHP4 nephronophthisis 4 1p36 1(1/0/0)

SNPs in LD with rs806104 (count: 27) View in gBrowse (chr1:5877108..5996108 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 27)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016