SNP Report

Basic Info

Name	rs11121956 dbSNP Ensembl
Location	chr1:5881375 - 5881375(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.47504
Functional Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000378156, ENST00000378169, ENST00000478423, ENST00000489180, ENST00000622020); NMD_transcript_variant(ENST00000378169, ENST00000489180); non_coding_transcript_exon_variant(ENST00000470763); non_coding_transcript_variant(ENST00000470763, ENST00000478423); upstream_gene_variant(ENST00000506941)
No. of Studies	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NPHP4	nephronophthisis 4	1p36	1(1/0/0)

SNPs in LD with rs11121956 (count: 0) View in gBrowse (chr1:5881375..5881375 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)