SNP Report

Basic Info
Name rs602201 dbSNP Ensembl
Location chr18:11882269 - 11882269(1)
Variant Alleles T/A
Ancestral Allele T
Minor Allele A
Minor Allele Frequence 0.36242
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000334049); downstream_gene_variant(ENST00000269162, ENST00000309976, ENST00000317235, ENST00000317251, ENST00000344987, ENST00000423027, ENST00000496196, ENST00000535121, ENST00000587724, ENST00000588072, ENST00000589731, ENST00000592306, ENST00000592331, ENST00000592447, ENST00000592755, ENST00000592894, ENST00000592977, ENST00000602628)
No. of Studies 2 (Positive: 0; Negative: 2; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Lohoff, F. W., 2010 T/A genotype test P-value = 0.946, allele test P-value = 0.739 genotype test P-value = 0.946, allele test P-value = 0.739 Negative
Yosifova, A.,2009 A/T Allelic association: P-value = 0.24 Allelic association: P-value = 0.24 No significant association was observed No significant association was observed Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
MPPE1 metallophosphoesterase 1 18p11.21 2(2/0/0)
GNAL guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type 18p11.22-p11.21 2(0/2/0)

SNPs in LD with rs602201 (count: 0) View in gBrowse (chr18:11882269..11882269 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)