BDgene

SNP Report

Basic Info
Name rs10500336 dbSNP Ensembl
Location chr16:6247504 - 6247504(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.161542
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000422070, ENST00000547372, ENST00000547605, ENST00000548749, ENST00000550418, ENST00000553186, ENST00000569895); non_coding_transcript_variant(ENST00000548749, ENST00000569895)
No. of Studies 2 (Positive: 0; Negative: 2; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ollila, H. M.,2009 A/G FBAT: P-value = 0.202177 FBAT: P-value = 0.202177 No significant association was observed No significant association was observed Negative
Baum, A. E., 2008 (a) G P-value = 0.018 when genotyped individually in the test samp...... P-value = 0.018 when genotyped individually in the test sample (NIMH); P-value = 0.38 when individually genotyped in the Replication sample (German); P-value = 0.022 in the combined dataset. OR (95% CI)=1.20 (1.02-1.41) More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RBFOX1 RNA binding protein, fox-1 homolog (C. elegans) 1 16p13.3 6(2/2/2)

SNPs in LD with rs10500336 (count: 17) View in gBrowse (chr16:6239839..6251117 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 17)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016