Study Report

Basic Info
Reference |
Kishi, T., 2008 (b) PMID: 18804497
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Citation |
Kishi, T., T. Kitajima, et al. (2008). "Association analysis of nuclear receptor Rev-erb alpha gene (NR1D1) with mood disorders in the Japanese population." Neurosci Res 62(4): 211-215.
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Disease Type |
Bipolar Disorder & Major Depressive Disorder |
Study Design |
case-control |
Study Type |
Candidate-gene association study |
Sample Size |
147 bipolar patients (93 patients with bipolar I disorder and 54 patients with bipolar II disorder), 322 major depressive disorder patients and 360 controls |
SNP/Region/Marker Size |
3 SNPs |
Predominant Ethnicity |
Mongloid |
Population |
Japanese |
Gender |
BD patients (75 males and 72 females); MDD patients (156 males and 166 females); healthy controls (201 males and 159 females) |
Age Group |
adults
:
BD patients: males mean age=47.8 (SD=14.6) years; MDD patients: males mean age=47.1 (SD=15.9) years; healthy controls: males mean age=35.9 (SD=14.7) years,
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Detail Info
Sample Diagnosis |
DSM-IV |
Technique |
genotyping |
Statistical Method |
Genotype deviation from the Hardy-Weinberg equilibrium (HWE) was evaluated by chi-square test (SAS/Genetics, release 8.2, SAS Japan Inc., Tokyo,Japan). Marker-trait association analysis was used to evaluate allele- and genotype-wise association with the chi-square test (SAS/Genetics, release 8.2, SAS Japan Inc.,Tokyo, Japan), and haplotype-wise association analysis was evaluated with a likelihood ratio test using the COCAPHASE2.403 program (Dudbridge, 2003). Bonferroni's correction was used to control inflation of the type I error rate. Power calculation was performed using two statistical programs prepared by Ohashi et al. (2001) (Ohashi et al.'s software) or Purcell et al. (2003) (Genetic Power Calculator: GPC). The significance level for all statistical tests was 0.05. |
Result Summary |
One SNP showed an association with bipolar disorder in females. After Bonferroni correction for multiple testing, however, this significance disappeared. No significant association was found withmajor depressive disorder. |

Genetic factors reported by this study for BD

SNPs reported by this study for BD (count: 3)
SNP |
Related Gene(s) |
Allele Change |
Risk Allele |
Statistical Values |
Author Comments |
Result Category |
rs3744805 |
NR1D1
THRA
|
A > G |
G |
Hardy-Weinberg equilibrium P value=0.152, genotypic P value=0.222, allelic P value=0.313 for bipolor disorder. Hardy-Weinberg equilibrium P value=0.328, genotypic P value=0.342, allelic P value=0.292 for bipolor I disorder. Hardy-Weinberg equilibrium P value=0.275, genotypic P value=0.473, allelic P value=0.693 for bipolor II disorder.
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|
Negative
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rs2071427 |
NR1D1
THRA
|
G > A |
A |
Hardy-Weinberg equilibrium P value=0.706, genotypic P value=0.873, allelic P value=0.891 for bipolor disorder. Hardy-Weinberg equilibrium P value=0.186, genotypic P value=0.558, allelic P value=0.902 for bipolor I disorder. Hardy-Weinberg equilibrium P value=0.265, genotypic P value=0.528, allelic P value=0.936 for bipolor II disorder.
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Negative
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rs939347 |
NR1D1
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A > G |
G |
Hardy-Weinberg equilibrium P value=0.367, genotypic P value=0.462, allelic P value=0.852 for bipolor disorder. Hardy-Weinberg equilibrium P value=0.261, genotypic P value=0.235, allelic P value=0.353 for bipolor I disorder. Hardy-Weinberg equilibrium P value=0.998, genotypic P value=0.842, allelic P value=0.886 for bipolor II disorder.
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Negative
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Genes reported by this study for BD (count: 1)
Gene |
Statistical Values/Author Comments |
Result Category |
NR1D1 |
Our findings suggest that NR1D1 does not play a major role in the pathophysiology of mood disorders ......
Our findings suggest that NR1D1 does not play a major role in the pathophysiology of mood disorders in the Japanese population.
More...
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Negative
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Genetic factors reported by this study for SZ and/or MDD