SNP Report

Basic Info

SNP related studies (count: 2)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Kishi, T., 2008 (b)	A > G	G	Hardy-Weinberg equilibrium P value=0.367, genotypic P value=...... Hardy-Weinberg equilibrium P value=0.367, genotypic P value=0.462, allelic P value=0.852 for bipolor disorder. Hardy-Weinberg equilibrium P value=0.261, genotypic P value=0.235, allelic P value=0.353 for bipolor I disorder. Hardy-Weinberg equilibrium P value=0.998, genotypic P value=0.842, allelic P value=0.886 for bipolor II disorder. More...		Negative
Severino, G.,2009	A/G		Alelle association: X²=1.15, P-value = 0.28; Geno...... Alelle association: X²=1.15, P-value = 0.28; Genotype association: X²=1.07, P-value = 0.30 More...	Genotype and allele frequency distributions did not differ s...... Genotype and allele frequency distributions did not differ significantly between cases and controls. More...	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NR1D1	nuclear receptor subfamily 1, group D, member 1	17q11.2	6(2/4/0)

SNPs in LD with rs939347 (count: 2) View in gBrowse (chr17:40099932..40100837 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs4795424		intron_variant	1.0[CEU]; 1.0[TSI]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs2071570		upstream_gene_variant	0.955[TSI]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Kishi, T., 2008 (b)	Hardy-Weinberg equilibrium P value=0.178, genotypic P value=0.907, allelic P value=0.831 for MDD.	No significant association was found with major depressive disorder.	Negative