SNP Report

Basic Info

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Fukuo, Y.,2010	C>T		Association analysis: genotype P-value = 0.52, allele P-valu...... Association analysis: genotype P-value = 0.52, allele P-value = 0.35 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
HTR6	5-hydroxytryptamine (serotonin) receptor 6, G protein-coupled	1p36-p35	3(1/2/0)

SNPs in LD with rs9659997 (count: 8) View in gBrowse (chr1:19665573..19688334 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs7543480	intron_variant; non_coding_transcript_variant	0.857[CHB]; 0.844[CHD]
rs7533981	intron_variant; non_coding_transcript_variant	0.857[CHB]; 0.877[CHD]
rs10917509	5_prime_UTR_variant	0.821[CHD]
rs10917517	intron_variant; non_coding_transcript_variant	0.857[CHB]
rs10917513	downstream_gene_variant	0.924[CHB]; 0.937[CHD]
rs7527271	intron_variant; non_coding_transcript_variant	0.857[CHB]; 0.847[CHD]
rs4912141	intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs1883565	downstream_gene_variant	0.857[CHB]; 0.847[CHD]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Fukuo, Y.,2010	Association analysis:genotype P-value = 0.65, allele P-value = 0.966	No significant association was observed.	Negative