BDgene

SNP Report

Basic Info
Name rs951439 dbSNP Ensembl
Location chr1:163063901 - 163063901(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.457268
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000421743)
No. of Studies 2 (Positive: 1; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Li, Y.,2010 A/G Allele association: P-value = 0.11, OR(95%CI)=0.838551(0.676...... Allele association: P-value = 0.11, OR(95%CI)=0.838551(0.676984-1.038675) More... No significant association was observed in BD. No significant association was observed in BD. Negative
Prata, D. P., 2006 no P-value no P-value A chi-square analysis showed no genotype-wise or allele-wise...... A chi-square analysis showed no genotype-wise or allele-wise association for any individual SNP. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RGS4 regulator of G-protein signaling 4 1q23.3 6(3/2/1)

SNPs in LD with rs951439 (count: 7) View in gBrowse (chr1:163063721..163069063 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 7)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)