BDgene

SNP Report

Basic Info
Name rs951436 dbSNP Ensembl
Location chr1:163063552 - 163063552(1)
Variant Alleles A/C
Ancestral Allele A
Minor Allele C
Minor Allele Frequence 0.365615
No. of Studies 2 (Positive: 2; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Prata, D. P., 2006 no P-value no P-value A chi-square analysis showed no genotype-wise or allele-wise...... A chi-square analysis showed no genotype-wise or allele-wise association for any individual SNP. More... Positive
Li, Y.,2010 G/T Allele association: P-value = 0.0078, OR(95%CI)=1.334761(1.0...... Allele association: P-value = 0.0078, OR(95%CI)=1.334761(1.078658-1.651668) More... Significant association was found in BD. Significant association was found in BD. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RGS4 regulator of G-protein signaling 4 1q23.3 6(3/2/1)

SNPs in LD with rs951436 (count: 4) View in gBrowse (chr1:163063552..163067527 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 4)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016